Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,735,208 – 6,735,321 |
Length | 113 |
Max. P | 0.663820 |
Location | 6,735,208 – 6,735,321 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 90.03 |
Mean single sequence MFE | -19.67 |
Consensus MFE | -14.74 |
Energy contribution | -16.19 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.49 |
Structure conservation index | 0.75 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663820 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6735208 113 - 23771897 UAAACUUAUGAAACAGCAACAUGAAUAGUUUAAAUAUGCAAUUUUCUAUAUAAACCAAUUGCAGCACUUUAAGG-AUAUUUUUACUAAAAAUGUCCUUUGAAGUAACAGCUCAA ..............(((...................(((((((.............)))))))..(((((((((-(((((((.....))))))))).)))))))....)))... ( -20.92) >DroSec_CAF1 8269 112 - 1 UAAACUUAUAAAUCAGCAACAUGAAUAGUUUAAAUAUGCAAUUUUUUAUAUAAGCCAAUUGCAGCACCUUAUGG-AUA-UUUUACCAAAAAUGUCCUUUGCAGUAACAGCUCAA ((((((......(((......)))..))))))....(((((((.............)))))))(((......((-(((-((((....)))))))))..)))............. ( -17.22) >DroSim_CAF1 6449 114 - 1 UAAACUUAUGAAACAGCAACAUAAAUAUUUUAAAAAUGCAAUAUUCUAUAUAAACCAAUUGCAUGACUUUAAGGCACAUUUUUACUAAAAAUGUCCUUUGAAGUAACAGCUCAA ..............(((..................(((((((...............))))))).(((((((((.(((((((.....))))))).)))))))))....)))... ( -20.86) >consensus UAAACUUAUGAAACAGCAACAUGAAUAGUUUAAAUAUGCAAUUUUCUAUAUAAACCAAUUGCAGCACUUUAAGG_AUAUUUUUACUAAAAAUGUCCUUUGAAGUAACAGCUCAA ..............(((...................(((((((.............)))))))..(((((((((.(((((((.....))))))).)))))))))....)))... (-14.74 = -16.19 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:16 2006