Locus 2394

Sequence ID 3L_DroMel_CAF1
Location 6,734,327 – 6,734,435
Length 108
Max. P 0.784448
window3694

overview

Window 4

Location 6,734,327 – 6,734,435
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.71
Mean single sequence MFE -47.13
Consensus MFE -39.46
Energy contribution -40.02
Covariance contribution 0.56
Combinations/Pair 1.19
Mean z-score -1.65
Structure conservation index 0.84
SVM decision value 0.57
SVM RNA-class probability 0.784448
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6734327 108 + 23771897
CUGCUCCUCCGGCGCCAGGAAGCGCAGCUUCUGGCUCAGCUCAUCGGCGAAGCUGCGCACCUCCUGGUUGCUGCGCGAGAAGUGCGAUCGCUGUGGAGGAUUCC------------CUAC
....((((((((((((((((.((((((((((..(((.(.....).)))))))))))))...)))))).))))((((.....)))).........))))))....------------.... ( -51.00)
>DroPse_CAF1 6711 99 + 1
C---UCCUCCGGCGCCAGGAAACGCAGCUUGUGGCUCAACUCAUCCGCAAAGCUGCGCACCUCCUGGUUGCUCCUCGAGAAGAAGGAUCGAGGCGGA---U---------------CUAC
.---...(((((((((((((..((((((((((((..........)))).))))))))....)))))).))).((((((.........))))))))))---.---------------.... ( -43.10)
>DroSec_CAF1 7351 120 + 1
CUGCUCCUCUGGCGCCAGGAAGCGCAGCUUCUGGCUCAGCUCAUCGGCGAAGCUGCGCACCUCCUGGUUGCUGCGCGAGAAGUGCGAUCGCUGUGGAGGAUUCCCAGCUGGCUCUGCUAC
.........(((((((((((.((((((((((..(((.(.....).)))))))))))))...))))))).(((((((.....))))....((((.((......)))))).)))...)))). ( -51.30)
>DroSim_CAF1 5544 120 + 1
CUGCUCCUCCGGCGCCAGGAAGCGCAGCUUCUGGCUCAGCUCAUCGGCGAAGCUGCGCACCUCCUGGUUGCUGCGCGAGAAGUGCGAUCGCUGUGGAGGAUUCCCAGCUGGCUCGGCUAC
....((((((((((((((((.((((((((((..(((.(.....).)))))))))))))...)))))).))))((((.....)))).........)))))).....(((((...))))).. ( -54.80)
>DroYak_CAF1 7366 120 + 1
CUGCUCCUCCGGCGUCAGGAAGCGCAACUUUUGGCUCAGCUCAUCGGCAAAGCUGCGCACCUCCUGGUUGCUGCGCGAGAAAUGGGAUCGCUGCGGGGGAUUUCCAGCUGGCUCCGCUAC
..((....(((((.((((((.(((((.(....)(((..(((....)))..))))))))...))))))...((((((((.........)))).)))).((....)).)))))....))... ( -39.50)
>DroPer_CAF1 6747 99 + 1
C---UCCUCCGGCGCCAGGAAACGCAGCUUGUGGCUCAACUCAUCCGCAAAGCUGCGCACCUCCUGGUUGCUCCUCGAGAAGAAGGAUCGAGGCGGA---U---------------CUAC
.---...(((((((((((((..((((((((((((..........)))).))))))))....)))))).))).((((((.........))))))))))---.---------------.... ( -43.10)
>consensus
CUGCUCCUCCGGCGCCAGGAAGCGCAGCUUCUGGCUCAGCUCAUCGGCAAAGCUGCGCACCUCCUGGUUGCUGCGCGAGAAGUGCGAUCGCUGCGGAGGAUUCC____________CUAC
....((((((((((((((((.((((((((((..((...........))))))))))))...)))))).)))...((((.........))))..))))))).................... (-39.46 = -40.02 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:15 2006