| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,726,404 – 6,726,521 |
| Length | 117 |
| Max. P | 0.732277 |
| Location | 6,726,404 – 6,726,521 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.84 |
| Mean single sequence MFE | -32.24 |
| Consensus MFE | -17.50 |
| Energy contribution | -17.20 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6726404 117 + 23771897 UGCCGUCCUCUUCGCCUAAUGUUUAGAGGUCCCUCUGUUUGGCAUGUAGCCAGUUUAAAGGGACCACUAAACGGUCGAGCCACUGGAGUUGUCUUAAAAUCUUUAGUUUUUCGCACU ....................((((((.(((((((.((.(((((.....)))))..)).))))))).))))))(((((((..(((((((............)))))))..)))).))) ( -36.80) >DroPse_CAF1 6977 115 + 1 U--CGCCGUUUUCGUCUAAUGUUUAGUGGUACCACUCUUUCGCAUGUAGCCAUUUUAUUGGGACCACUAAAUAUUUGAGACAUUGGAGUUGCACUAAUAUUCACUGAUUUAAGCACU .--.((.....(((((((((((((((((((.(((.......((.....))........))).)))))))))))))..))))(((((.......))))).......)).....))... ( -26.96) >DroSec_CAF1 7883 117 + 1 UGCCGUCCUCUUCGCCUAAUGUUUAGAGGUACCUCUUUUUGGCAUGUAGCUAGUUUAAAGGGACCACUAAACGGUCGAGCCACUGGAGUUUUCUUAAAAUCUUUAGUUUUUCGCACU ....................((((((.(((.((.(((((((((.....)))))...))))))))).))))))(((((((..(((((((.(((....))).)))))))..)))).))) ( -28.50) >DroEre_CAF1 7861 117 + 1 UGCCGUCCUCUUCGUCUAAUGUUUAGAGGUCCCUCUGUUUGGCAUGUAGCCAGUUUAAAGGGACCACUAAACGGUCGGGCCACUGGAGUUGCCUUAAAAUCUUUAGUUUUUCGCACU (((..........((((..(((((((.(((((((.((.(((((.....)))))..)).))))))).)))))))...)))).(((((((............))))))).....))).. ( -37.40) >DroAna_CAF1 9333 117 + 1 CGCCGUCUUCUUCGUCUAAUGUUUAGUGGUCCCUCUGUUUGGCAUGUAGCCUGAAUAAAGGGACCUCUAUUCGAGCAGACCACUGGAGUUGCACUACAUUCCAUUAAUUUUCGCGAA (((..........((((..((..(((.(((((((.((((((((.....))).))))).))))))).)))..))...))))...((((((........)))))).........))).. ( -36.80) >DroPer_CAF1 6039 115 + 1 U--CGCCGUUUUCGUCUAAUGUUUAGUGGUACCACUCUUUCGCAUGUAGCCAUUUUAUUGGGACCACUAAAUAUUUGAGACAUUGGAGUUGCACUAAUAUUCACUGAUUUAAGCACU .--.((.....(((((((((((((((((((.(((.......((.....))........))).)))))))))))))..))))(((((.......))))).......)).....))... ( -26.96) >consensus UGCCGUCCUCUUCGUCUAAUGUUUAGAGGUACCUCUGUUUGGCAUGUAGCCAGUUUAAAGGGACCACUAAACGGUCGAGCCACUGGAGUUGCACUAAAAUCCAUAGAUUUUCGCACU ....((...(((((.((..(((((((.(((.(((....(((((.....))))).....))).))).)))))))....))....)))))..))......................... (-17.50 = -17.20 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:06 2006