Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 654,364 – 654,470 |
Length | 106 |
Max. P | 0.998791 |
Location | 654,364 – 654,470 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 96.04 |
Mean single sequence MFE | -17.89 |
Consensus MFE | -17.21 |
Energy contribution | -16.93 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.96 |
Structure conservation index | 0.96 |
SVM decision value | 3.23 |
SVM RNA-class probability | 0.998791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 654364 106 + 23771897 AAUAAAAACUUAAGUAGCCCGUUAAGCUCAUAAGUAAAUAGUGAAAUAAAAUAAUAAAAUCAAAUUACAUUUGCGUUCAAUUUGCAGCUGCGGGCAUUAAAAAACU ................((((((..((((((...((((((.((((....................))))))))))........)).))))))))))........... ( -19.55) >DroSec_CAF1 10222 106 + 1 AAUAAAAACUUAAGUAGCCCGUUAAGUUCAUAUGUAAAUAGUGAAAUAAAAUAAUAAAAUCAAAUUACAUUUGCGUUCAAUUUGCAGCUGCGGGCAUUAAAAAACU ................((((((..((((((.((((((((.((((....................))))))))))))......)).))))))))))........... ( -19.25) >DroSim_CAF1 10167 106 + 1 AAUAAAAACUUAAGUAGCCCGUUAAGUUCAUAUGUAAAUAGUGAAAUAAAAUAAUAAAAUCAAAUUACAUUUGCUUUCAAUUUGCAGCUGCGGGCAUUAAAAAACU ................((((((..(((.....(((((((..(((((((((.((((........))))..)))).)))))))))))))))))))))........... ( -18.60) >DroEre_CAF1 10301 106 + 1 AAUAAAAACUUAAGUAGCCCGUUAAGCUCAUAAGUAAAUAGUAAAAUAAAUUCAUAAAAUCAAAUUACAUUUGCGUUCAACUUGCAGCUGCGAGCAUUAAAAAACU ................((.(((..((((..(((((.....(((((...((((..........))))...))))).....))))).))))))).))........... ( -12.60) >DroYak_CAF1 10506 106 + 1 AAUAAAAACUUAAGUAGCCCGUUAAGCUCAUAAGUAAAUAGUAAAAUAAAAUAAUAAAAUCAAAUUACAUUUGCGUUCAAUUUGCAGCUGCGGGCAUUAAAAAACC ................((((((..((((((...((((((.((((....................))))))))))........)).))))))))))........... ( -19.45) >consensus AAUAAAAACUUAAGUAGCCCGUUAAGCUCAUAAGUAAAUAGUGAAAUAAAAUAAUAAAAUCAAAUUACAUUUGCGUUCAAUUUGCAGCUGCGGGCAUUAAAAAACU ................((((((..((((((...((((((.((((....................))))))))))........)).))))))))))........... (-17.21 = -16.93 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:11 2006