Locus 239

Sequence ID 3L_DroMel_CAF1
Location 654,364 – 654,470
Length 106
Max. P 0.998791
window357

overview

Window 7

Location 654,364 – 654,470
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 96.04
Mean single sequence MFE -17.89
Consensus MFE -17.21
Energy contribution -16.93
Covariance contribution -0.28
Combinations/Pair 1.09
Mean z-score -1.96
Structure conservation index 0.96
SVM decision value 3.23
SVM RNA-class probability 0.998791
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 654364 106 + 23771897
AAUAAAAACUUAAGUAGCCCGUUAAGCUCAUAAGUAAAUAGUGAAAUAAAAUAAUAAAAUCAAAUUACAUUUGCGUUCAAUUUGCAGCUGCGGGCAUUAAAAAACU
................((((((..((((((...((((((.((((....................))))))))))........)).))))))))))........... ( -19.55)
>DroSec_CAF1 10222 106 + 1
AAUAAAAACUUAAGUAGCCCGUUAAGUUCAUAUGUAAAUAGUGAAAUAAAAUAAUAAAAUCAAAUUACAUUUGCGUUCAAUUUGCAGCUGCGGGCAUUAAAAAACU
................((((((..((((((.((((((((.((((....................))))))))))))......)).))))))))))........... ( -19.25)
>DroSim_CAF1 10167 106 + 1
AAUAAAAACUUAAGUAGCCCGUUAAGUUCAUAUGUAAAUAGUGAAAUAAAAUAAUAAAAUCAAAUUACAUUUGCUUUCAAUUUGCAGCUGCGGGCAUUAAAAAACU
................((((((..(((.....(((((((..(((((((((.((((........))))..)))).)))))))))))))))))))))........... ( -18.60)
>DroEre_CAF1 10301 106 + 1
AAUAAAAACUUAAGUAGCCCGUUAAGCUCAUAAGUAAAUAGUAAAAUAAAUUCAUAAAAUCAAAUUACAUUUGCGUUCAACUUGCAGCUGCGAGCAUUAAAAAACU
................((.(((..((((..(((((.....(((((...((((..........))))...))))).....))))).))))))).))........... ( -12.60)
>DroYak_CAF1 10506 106 + 1
AAUAAAAACUUAAGUAGCCCGUUAAGCUCAUAAGUAAAUAGUAAAAUAAAAUAAUAAAAUCAAAUUACAUUUGCGUUCAAUUUGCAGCUGCGGGCAUUAAAAAACC
................((((((..((((((...((((((.((((....................))))))))))........)).))))))))))........... ( -19.45)
>consensus
AAUAAAAACUUAAGUAGCCCGUUAAGCUCAUAAGUAAAUAGUGAAAUAAAAUAAUAAAAUCAAAUUACAUUUGCGUUCAAUUUGCAGCUGCGGGCAUUAAAAAACU
................((((((..((((((...((((((.((((....................))))))))))........)).))))))))))........... (-17.21 = -16.93 +  -0.28) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:11 2006