| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,719,110 – 6,719,224 |
| Length | 114 |
| Max. P | 0.721602 |
| Location | 6,719,110 – 6,719,224 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.97 |
| Mean single sequence MFE | -37.93 |
| Consensus MFE | -24.30 |
| Energy contribution | -24.88 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6719110 114 + 23771897 ---UGCUG---AUUGCCCUCGUCCAUCAGCUGCUGGAUGAGAUUGGCAAUGUCCUCGCGCUUUUUCGUCACUGUGAGGAAGUCAAACCAGUUGGUCAGCUGCUUGAUGGGCAGUCUGUAG ---(((.(---(((((((..(((...(((((((..(.((.(.(((((....((((((((............)))))))).))))).))).)..).))))))...))))))))))).))). ( -45.20) >DroVir_CAF1 93268 117 + 1 ---UGCUGUGUGUUGCUGUCAUCCAUCAGCUGCUGUAUCAGCUGGGCGAUGUCCUCGCGCUUUUUGGUGACGGUAAGAUAAUCGAACCAAUUGGUUAGCUGCUUGAUGGGCAGCCUGUAA ---.....(((.(((((((((.((((((((((......)))))))((((.....))))......)))))))))))).)))....((((....)))).((((((.....))))))...... ( -43.30) >DroPse_CAF1 134 114 + 1 ---UGGGU---GUUGGUCUCGUCCAUCAGCUUCUGGAUGAGAUUGGAAAUGUCCUCGCGCUUCUUGGUGACGGUGAUGAAGUCGAACCAGUUCGUCAGCUGCUUGAUGGGCAGUCUGUAG ---.....---.(..((((((((((........))))))))))..)...((((((((.((.....(....)(.(((((((.(......).))))))).).)).))).)))))........ ( -37.70) >DroGri_CAF1 66077 117 + 1 ---UGCUGUGUGUUGUUCUCGUCCAUCAGCUGCUGUAUCAGCUGGGCAAUAUCCUCGCGCUUCUUGGUGACGGUGAGGUAAUCGAACCAAUUGGUCAGCUGCUUGAUGGGCAGGCGGUAA ---((((((.(...(....)((((((((((.((((.(((((.(((.......((((((.(.((.....)).)))))))........))).))))))))).)).))))))))).)))))). ( -44.76) >DroWil_CAF1 158 117 + 1 UGUUGCUU---AUUGGCUUCGUCCAUUAAUUUCUGAAUCAGUUGGGCAAUGUCUUCGCGCUUUUUCGUCACCGUGAGGAAAUCAAACCAGUUUGUCAGUUGUUUGAUUGGCAAACGAUAA .(((((((---(((((.((((............)))))))).)))))))).((((((((............))))))))..........(((((((((((....)))))))))))..... ( -30.30) >DroMoj_CAF1 6760 117 + 1 ---UGGUGUGCAUUGUUCUCAUCCAUCAGCUGCUGUAUUAGCUGGGCAAUGUCUUCACGUUUCUUGGUCACAGUUAGGUAAUCGAACCAAUUGGUCAGUUGUUUAAUGGGUAAUCUAUAA ---..(((.(((((((.........(((((((......))))))))))))))...))).......(((.((.((((..((((.((.((....)))).))))..))))..)).)))..... ( -26.30) >consensus ___UGCUG___AUUGCUCUCGUCCAUCAGCUGCUGUAUCAGCUGGGCAAUGUCCUCGCGCUUCUUGGUCACGGUGAGGAAAUCGAACCAAUUGGUCAGCUGCUUGAUGGGCAGUCUGUAA ....................((((((((((.((((.(((((.(((.......((((((..............))))))........))).))))))))).)).))))))))......... (-24.30 = -24.88 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:03 2006