| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,704,447 – 6,704,549 |
| Length | 102 |
| Max. P | 0.799910 |
| Location | 6,704,447 – 6,704,549 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 80.78 |
| Mean single sequence MFE | -54.92 |
| Consensus MFE | -38.18 |
| Energy contribution | -40.18 |
| Covariance contribution | 2.01 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6704447 102 + 23771897 CGGCUUGGGCAUGCCCAGUGCAGCGCGUUGAUAGGCGGAUGGAGGCGGCGGCGGUUGACCAUAUCCGGCUGCUGCCGCCGCCGCUGCUGGUCCGCCCAGUAG ..(((.((((..(((....(((((.((((....))))...((.((((((((((((((........)))))))))))))).))))))).)))..))))))).. ( -56.70) >DroPse_CAF1 88 102 + 1 CGGCUUGGGCAUUCCCAGCGUCGCGGAUCGAUAGGCGGACGGCGGUGGAGGCGGUUGGCCAUAGCCGGCAGCCGCUGCCGCCGCCGCUGGUCCCCCGAGCAG ..(((((((.....(((((((((.....)))).(((((.(((((((((..(((((((....))))).))..)))))))))))))))))))...))))))).. ( -62.20) >DroGri_CAF1 183 102 + 1 UGGCUUGGUCAUUCCCAACGCUGAGGUGCGAUAUGCCCCUUGUGGCGGCGGUGGUUGCCCAUAGCCUGCAGCGGCUGCCGCCGCCGCUGGUCCACUCAACAG .(((((((......))))(((......)))....)))((..((((((((((..(((((.((.....))..)))))..)))))))))).))............ ( -45.30) >DroEre_CAF1 130 102 + 1 CGGCUUGGGCAUGCCCAGUGCAGCGCGUUGAUAGGCGGAUGGAGGCGGCGGCGGCUGCCCAUAUCCGGCUGCUGCCGCCGCCGCUGCCGGUCCGCCCAGCAG ..(((((((....))))).)).....((((...(((((((((.((((((((((((.(((.......))).))))))))))))....)).))))))))))).. ( -62.60) >DroYak_CAF1 152 102 + 1 CGGCUUUGGCAUGCCCAGUGCAGCGCGUUGAUAGGCGGAUGGAGGCGGCGGCGGUUGACCAUAUCCGGCUGCUGCCGCCGCCGCUGCCGGUCCGCCCAGCAG ..(((..(((..(((((((((...))))))...(((((.(((.((((((((((((((........)))))))))))))).)))))))))))..))).))).. ( -55.10) >DroMoj_CAF1 240 102 + 1 CGGCUUGGUCAUGCCCAGCGCCGAGGGACGAUAAGCAGAUGGGGGCGGCGGCGGCUGGCCAUAACCUGCUGCAGCGGCCGCAGCAGCCGGGCCGCCCAGCAG ..(((((.((...(((........)))..)))))))...((.((((((((((.....)))....((.(((((.((....)).))))).)))))))))..)). ( -47.60) >consensus CGGCUUGGGCAUGCCCAGCGCAGCGCGUCGAUAGGCGGAUGGAGGCGGCGGCGGUUGACCAUAUCCGGCUGCUGCCGCCGCCGCUGCCGGUCCGCCCAGCAG ..(((((((....))))).)).((.....(((.(((((.(((.((((((((((((((........)))))))))))))).)))))))).)))......)).. (-38.18 = -40.18 + 2.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:59 2006