| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,700,975 – 6,701,107 |
| Length | 132 |
| Max. P | 0.652782 |
| Location | 6,700,975 – 6,701,086 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.56 |
| Mean single sequence MFE | -22.88 |
| Consensus MFE | -14.52 |
| Energy contribution | -15.43 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6700975 111 + 23771897 AUUACCAGUUACCAGACUGCAUAAAUACGAAUUGA----AUGACCUUUUUGGUCAGCAACGUAACGACGACGCACAAUAUUGUAUUAAUAAUGUUGUAUUUUUUUUUGUUUUAUU .....(((((....))))).(((((.(((((..((----((((((.....)))))((..(((....)))..))((((((((((....))))))))))..)))..)))))))))). ( -25.70) >DroSec_CAF1 77399 115 + 1 AUUACCAGUUACCAGACUGCAUAAAUACGAAUUGAAUGAAUGACCUUUUUGGUCAGCAACGUAACGACGACGCAUAAUAUUGUAUUAAUAAUGUUGUAUUUUUUUUUGUUUUAUU .....(((((....))))).(((((.(((((..(((....(((((.....)))))((..(((....)))..))((((((((((....))))))))))..)))..)))))))))). ( -23.80) >DroSim_CAF1 96130 110 + 1 AUUACCAGUUACCAGACUGCAUAAAUACGAAUUGAAUGAAUGACCUUUUUGGUCAGCAACGUAACGACGACGCACAAUAUUGUAUUAAUAAUGUUGUAUUUUUUU-----UUAUU .....(((((....)))))...............(((((((((((.....)))))((..(((....)))..))((((((((((....)))))))))).......)-----))))) ( -22.40) >DroEre_CAF1 89668 101 + 1 AUUACCAGUU---CGACUGCAUAAAUGCGAAUUGA----AUGACCUUUUUGGUCAGCAACGUAACGACGACGCACAAUAUUGUAUUAAUAAUGUUGUAUUU---UU----UCCUU .....(((((---((.(.........)))))))).----.(((((.....)))))((..(((....)))..))((((((((((....))))))))))....---..----..... ( -25.10) >DroYak_CAF1 91330 104 + 1 AUUACCAGUU---GGAGUGCAUAAAUACGAAUUGA----AUGACCUUUUUGGUCAGCAACGUAACGACGACGCACAAUAUUGUAUUAAUAAUGUUGUAUUUUUUUU----UCCUU .....(((((---.(.((......)).).))))).----.(((((.....)))))((..(((....)))..))((((((((((....)))))))))).........----..... ( -22.40) >DroAna_CAF1 100060 97 + 1 AUUACGAAUA---GAACUGCAUAAA------UUGU----AUGACCUUUUUGGUCACCAACGUAACGACGACGCACAAUAUUGUUUCAGUC-----UUUUUUUUCUUGGCUUCGCC .(((((....---....((((....------.)))----)(((((.....)))))....))))).(((((.(((......))).)).)))-----...........(((...))) ( -17.90) >consensus AUUACCAGUU___AGACUGCAUAAAUACGAAUUGA____AUGACCUUUUUGGUCAGCAACGUAACGACGACGCACAAUAUUGUAUUAAUAAUGUUGUAUUUUUUUU____UCAUU ..................((....................(((((.....)))))....(((....)))..))((((((((((....)))))))))).................. (-14.52 = -15.43 + 0.92)
| Location | 6,701,011 – 6,701,107 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 83.54 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -13.68 |
| Energy contribution | -14.77 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6701011 96 + 23771897 UGACCUUUUUGGUCAGCAACGUAACGACGACGCACAAUAUUGUAUUAAUAAUGUUGUAUUUUUUUUUGUUUUAUUGCACUCUUCCA------ACAUGAUUAU (((((.....)))))((((...(((((.((...((((((((((....)))))))))).....)).)))))...)))).........------.......... ( -19.90) >DroSec_CAF1 77439 96 + 1 UGACCUUUUUGGUCAGCAACGUAACGACGACGCAUAAUAUUGUAUUAAUAAUGUUGUAUUUUUUUUUGUUUUAUUGCACUCUUCCA------ACAUGAUUAU (((((.....)))))((((...(((((.((...((((((((((....)))))))))).....)).)))))...)))).........------.......... ( -18.00) >DroSim_CAF1 96170 91 + 1 UGACCUUUUUGGUCAGCAACGUAACGACGACGCACAAUAUUGUAUUAAUAAUGUUGUAUUUUUUU-----UUAUUGCACUCUUCCA------ACAUGAUUAU (((((.....)))))(((((((....)))....((((((((((....))))))))))........-----...)))).........------.......... ( -19.30) >DroEre_CAF1 89701 89 + 1 UGACCUUUUUGGUCAGCAACGUAACGACGACGCACAAUAUUGUAUUAAUAAUGUUGUAUUU---UU----UCCUUGCCCUCCUCCA------ACAUGAUUAU (((((.....)))))((..(((....)))..))((((((((((....))))))))))....---..----................------.......... ( -18.40) >DroYak_CAF1 91363 92 + 1 UGACCUUUUUGGUCAGCAACGUAACGACGACGCACAAUAUUGUAUUAAUAAUGUUGUAUUUUUUUU----UCCUUGCCCUCUUCCA------ACAUGAUUAU (((((.....)))))((..(((....)))..))((((((((((....)))))))))).........----................------.......... ( -18.40) >DroAna_CAF1 100087 97 + 1 UGACCUUUUUGGUCACCAACGUAACGACGACGCACAAUAUUGUUUCAGUC-----UUUUUUUUCUUGGCUUCGCCUCUGUCUCCCUCGAUUUGUGUGAUUAU (((((.....)))))....(((....))).(((((((.((((...(((..-----...........(((...))).))).......)))))))))))..... ( -18.94) >consensus UGACCUUUUUGGUCAGCAACGUAACGACGACGCACAAUAUUGUAUUAAUAAUGUUGUAUUUUUUUU____UCAUUGCACUCUUCCA______ACAUGAUUAU (((((.....)))))((..(((....)))..))((((((((((....))))))))))............................................. (-13.68 = -14.77 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:58 2006