Locus 2383

Sequence ID 3L_DroMel_CAF1
Location 6,691,506 – 6,691,611
Length 105
Max. P 0.535363
window3672

overview

Window 2

Location 6,691,506 – 6,691,611
Length 105
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 77.94
Mean single sequence MFE -40.34
Consensus MFE -17.21
Energy contribution -18.93
Covariance contribution 1.72
Combinations/Pair 1.05
Mean z-score -2.16
Structure conservation index 0.43
SVM decision value 0.00
SVM RNA-class probability 0.535363
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6691506 105 + 23771897
AUAUUC---CUCCAAGGGCA------GGUUCUCCAGAUUGGCAUGCUCGUCCUGGAGCUCCACAUCUUGCUCGGAGGGAAUGUGCU---CCUGAGCCUGCACAAUGCAAUCUUCCAG
...(((---((((..(((((------((..((((((((.((....)).)).))))))..))......)))))))))))).(((((.---.........))))).............. ( -34.00)
>DroVir_CAF1 147290 108 + 1
AUAUUCCUCUUCCGCGGGCA------G---CUCCAAGCUGGGCUGCGCGUCCUGCAGCUCGACAUUUUGCUCGGCGGGCACAUGCUCGCCCUUUGCCUGCUGAAUGCACUCCUCAAG
.........(((.(((((((------(---(.......(((((((((.....))))))))).......))..(((((((....)))))))...))))))).)))............. ( -42.04)
>DroGri_CAF1 60775 108 + 1
AUAUUCAUCCUCAACGGGCA------G---CUCCAAGCUGGGCUGCUCGUCCUGCAGCUCGACUUUUUGCUCGGCGGGCACAUGGUCGCCCUUUGCCUGCUGAAUGCACUCCUCAAG
.............(((((((------(---(((......)))))))))))..((((((..........))((((((((((...((....))..)))))))))).))))......... ( -40.50)
>DroMoj_CAF1 77437 108 + 1
AUAUUCAUCCUCCGGCGGCA------U---CUCCAAGUUGGGCUGCUCAUCCUGCAGCUCAACAUUUUGCUCGGCGGGCACAUGCUCGCCCUUUGCCUGCUGAAUGCACUCCUCAAG
............((((((((------.---......((((((((((.......)))))))))).........(((((((....)))))))...)))).))))............... ( -42.60)
>DroAna_CAF1 89748 108 + 1
AUAGUCGUUCUCCAUGGGCA------GGUUCUCCAGAUUGGGCUGCUCGUCCUGGAGCUCCACAUUCUGCUCGGCCGGAAUGUGCU---CCUGAGCCUGCAGAACGCAUUCCUCCAG
...(.(((((((....)(((------(((((........((((.....)))).(((((...((((((((......)))))))))))---)).))))))))))))))).......... ( -40.70)
>DroPer_CAF1 66584 114 + 1
GUAGUCGUUGUCCAUGGGCAGCUCGAGGUUCUCGAGAUUGGGCUGCUCGUCCUGCAGCUCCACAUUCUGCUCGGCUGGGAUGUGCU---CCUGGGCCUGCUGAAUGCAUUCCUCCAG
..((((((((((....))))))(((((...)))))))))(((((((.......))))).)).(((((.((..(.(..(((.....)---))..).)..)).)))))........... ( -42.20)
>consensus
AUAUUCAUCCUCCACGGGCA______G___CUCCAAAUUGGGCUGCUCGUCCUGCAGCUCCACAUUUUGCUCGGCGGGCACAUGCU___CCUGUGCCUGCUGAAUGCACUCCUCAAG
...............(((.....................(((((((.......))))))).......(((((((((((.................))))))))..))).)))..... (-17.21 = -18.93 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:54 2006