| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,685,632 – 6,685,733 |
| Length | 101 |
| Max. P | 0.898299 |
| Location | 6,685,632 – 6,685,733 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.83 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -12.59 |
| Energy contribution | -14.78 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6685632 101 + 23771897 UUCCUGCAACCCUAACCCAUUUGCUCAGUGGCCUUGACAGAAGACCAUAAAACG--------AUAGCACCAUAAGAACCUUAUGCCACUGGGCA----UACAUACAUAUACUG .....................((((((((((((((.....)))...........--------........(((((...))))))))))))))))----............... ( -20.50) >DroSec_CAF1 62308 105 + 1 UUCCUGCAACCCUAACCCAUUUGCUCAGUGGCCUUGACAGAAGACCAUAACACG--------AUAGCACCAUAAGAACCUUAUGCCACUGGGCAUGCAUACAUACAUAUACUA ....((((.............((((((((((((((.....)))...........--------........(((((...))))))))))))))))))))............... ( -21.81) >DroSim_CAF1 80817 105 + 1 UUCCUGCAACCCUAACCCAUUUGCUCAGUGGCCUUGACAGAAGACCAUAACACG--------AUAGCACCAUAAGAACCUUAUGCCACUGGGCAUGCAUACAUACAUAUACUA ....((((.............((((((((((((((.....)))...........--------........(((((...))))))))))))))))))))............... ( -21.81) >DroEre_CAF1 74279 101 + 1 UUCCUGCAACCCUAACCCAUUUGCUCAGUGGCCUUGACAGCAGACCAUAACACCAUAACACCAUAACACCAUAAGAACCUUAUGCCACUGGGCAU------------AUACCA .....................(((((((((((.(((....)))...........................(((((...)))))))))))))))).------------...... ( -19.80) >DroYak_CAF1 71593 85 + 1 UUCCUGCAACCCUAACCCAUUUGCUCAGUGGCCUUGACAGCAGACCAUAAC----------------ACCAUAAGAACCUUAUGCCACUGGGCAU------------AUACUA .....................(((((((((((.(((....)))........----------------...(((((...)))))))))))))))).------------...... ( -19.80) >DroPer_CAF1 60253 82 + 1 UUCCUGCAACCCUAACCCAUUUGCUCAGUGACCUUGACAGAAGACCAAAAC--G-------------ACC-AAAGAACUUUAUGA--------------ACGUACGAGUAUU- .....................(((((..((..(((.....)))..))..((--(-------------..(-(..........)).--------------.)))..)))))..- ( -5.30) >consensus UUCCUGCAACCCUAACCCAUUUGCUCAGUGGCCUUGACAGAAGACCAUAACACG________AUAGCACCAUAAGAACCUUAUGCCACUGGGCAU____ACAUACAUAUACUA .....................((((((((((((((.....)))...........................(((((...))))))))))))))))................... (-12.59 = -14.78 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:53 2006