Locus 2381

Sequence ID 3L_DroMel_CAF1
Location 6,685,174 – 6,685,275
Length 101
Max. P 0.630277
window3670

overview

Window 0

Location 6,685,174 – 6,685,275
Length 101
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 80.19
Mean single sequence MFE -23.65
Consensus MFE -12.09
Energy contribution -11.93
Covariance contribution -0.16
Combinations/Pair 1.32
Mean z-score -2.20
Structure conservation index 0.51
SVM decision value 0.20
SVM RNA-class probability 0.630277
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6685174 101 - 23771897
UGUCUACGGCUCUUAUUGCUAUUACCAGUAUUUUGGUAUUUGA-------------UUUUGGUCUAUGAUAUUUGGC-UUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACA
.(((...(((.......)))..((((((....)))))).((((-------------(((((((.(.(((...(((((-....)))))..))).).))))))))))).)))..... ( -27.20)
>DroSec_CAF1 61852 101 - 1
UGUCUACGGCUCUUAUUGCUAUUACCAGUAUUUUGGUAUUUGG-------------UUUUGGUCUAUGAUAUUUGGC-UUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACA
.(((...(((.......))).......(.((((((((((((((-------------..((((((...(........)-...))))))..)))))))))))))))...)))..... ( -25.30)
>DroSim_CAF1 80361 101 - 1
UGUCUACGGCUCUUAUUGCUAUUACCAGUAUUUUGGUAUUUGG-------------UUUUGGUCUAUGAUAUUUGGC-UUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACA
.(((...(((.......))).......(.((((((((((((((-------------..((((((...(........)-...))))))..)))))))))))))))...)))..... ( -25.30)
>DroEre_CAF1 73819 101 - 1
UGUCUACAGCUCUUAUAGCUAUUUCUAGUGCCUUGGUAUUUGG-------------UUUUGGUCUAUGAUAUUUGGC-UUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACA
.(((...((((.....)))).........((.(((((((((((-------------..((((((...(........)-...))))))..))))))))))).))....)))..... ( -23.50)
>DroYak_CAF1 71115 114 - 1
UGUCUACAGCUCUUAUAGCGAUUACUAGUGUUUUGGUAUUUGGUUUUUGGUUUUGGUUUUGGUCUAUGAUAUUUGGC-UUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACA
.(((....(((.....)))(((((((((....))))))((((((.(((((..((((((..((((..........)))-)..))))))..))))).)))))))))...)))..... ( -27.70)
>DroMoj_CAF1 71519 78 - 1
UUUGCUUG----------------CCA----UUUGGUAUUUGU-------------UUAUGUAC--UUGUAUUUGGUGUUUGUCUAA--UUGAAUAUCAAAGUCAAUGACUUACA
......((----------------((.----...))))..(((-------------....((..--(((..(((((((((((.....--.)))))))))))..)))..))..))) ( -12.90)
>consensus
UGUCUACGGCUCUUAUUGCUAUUACCAGUAUUUUGGUAUUUGG_____________UUUUGGUCUAUGAUAUUUGGC_UUUGGCCAACUUCGAAUAUCAAAGUCAAUGACUUACA
.........................((..((((((((((((((...............((((((.................))))))..))))))))))))))...))....... (-12.09 = -11.93 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:52 2006