| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,684,740 – 6,684,837 |
| Length | 97 |
| Max. P | 0.762993 |
| Location | 6,684,740 – 6,684,837 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.12 |
| Mean single sequence MFE | -21.55 |
| Consensus MFE | -8.81 |
| Energy contribution | -9.29 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6684740 97 + 23771897 CAAUAUUCAUAAGACCAGCUGUU--------CCAGCAUCCAUAUGCAAAUGAGGGGUUCUACGACC-------CAAUCCACAGCCCAACCCCUGGAGCCACCACAUCCCCUC----- ....................(((--------((.((((....)))).....(((((((........-------.............))))))))))))..............----- ( -18.10) >DroSec_CAF1 61408 97 + 1 CAAUAUUCAUAAGACCAGCUGUU--------CCAGCAUCCAAAUGCAAAUGAGGGGUUCUACGACC-------CACUCCACAGCCCAACCCCUGGAGCCACCACAUCCCCUC----- .................(((((.--------...((((....))))....((((((((....))))-------).))).)))))(((.....))).................----- ( -20.30) >DroSim_CAF1 79927 97 + 1 CAAUAUUCAUAAGACCAGCUGUU--------CCAGCAUCCAAAUGCAAAUGAGGGGUUCUACGACC-------CACUCCAUAGCCCAACCCCUGGAGCCACCACAUCCCCUC----- ....................(((--------(((((((....))))....((((((((....))))-------).)))..............))))))..............----- ( -20.00) >DroEre_CAF1 73388 97 + 1 CAAUAUUCAUAAGACCAGCUGUU--------CCAGCAUCCAUAUGCAAAUGAGGGGUUCUACGACC-------CAGUCUACUGCCCAGCCCCUGGAGCCCCUGGAUCCCCUC----- ............((((((..(((--------((.((((....)))).....(((((((........-------(((....)))...))))))))))))..)))).)).....----- ( -27.30) >DroYak_CAF1 70667 112 + 1 CAAUAUUCAUAAGACCAGCUGUUCCAAUGUUCCAGCAUCCAUAUGCAAAUGACGGGUUCUACGACCCACUACCCACUCUACAGCCCAACCCCUGGAGUCACCACAUCCCCGC----- ............(((..(((((............((((....)))).......(((((....)))))............)))))(((.....))).))).............----- ( -20.10) >DroPer_CAF1 59324 98 + 1 CCAUAUUCAUGAGACCAGCUGUU--------GUAGCUC--UCAUGCAAAUUCGUUGC-AGACAACCCCUGGGUAAACACACACCCCAACACCUU-----CCCCCAU---CUGGGGAA .......(((((((.(.((....--------)).).))--))))).......((((.-...))))....((((........))))........(-----((((...---..))))). ( -23.50) >consensus CAAUAUUCAUAAGACCAGCUGUU________CCAGCAUCCAUAUGCAAAUGAGGGGUUCUACGACC_______CACUCCACAGCCCAACCCCUGGAGCCACCACAUCCCCUC_____ ..............(((((((...........))))................((((((............................)))))))))...................... ( -8.81 = -9.29 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:51 2006