Locus 2379

Sequence ID 3L_DroMel_CAF1
Location 6,684,580 – 6,684,682
Length 102
Max. P 0.989893
window3668

overview

Window 8

Location 6,684,580 – 6,684,682
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -27.87
Consensus MFE -22.78
Energy contribution -23.70
Covariance contribution 0.92
Combinations/Pair 1.10
Mean z-score -2.53
Structure conservation index 0.82
SVM decision value 2.19
SVM RNA-class probability 0.989893
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6684580 102 - 23771897
GUGUUACAUAAAUUUUCCCAAACUGGGAAUUAUUGUAAUACAGAGAGGAUCCCAACAUACUGAUAUUCUAUUUAUAGGUUUUUAGGUGGUGAUUCAUCUAAC
((((((((......(((((.....)))))....))))))))..(((((((((((.....((((...((((....))))...)))).))).))))).)))... ( -29.50)
>DroSec_CAF1 61248 102 - 1
GUGUUACAUACAUUUUCCCAGGCUGGGAAUUAUUAUAAUACAGGCAGGAUCCCAACAUACUGAUCUUCUAUUUAUAGGUUUUUAGGUGGUGAUUCAUCUAAC
((((((........(((((.....)))))......)))))).....((((((((.....((((...((((....))))...)))).))).)))))....... ( -22.64)
>DroSim_CAF1 79767 102 - 1
GUGUUAAAUAAAUUUUCCCAGGCUGGGAUUUAUUAUAAUACAGGGAGGAUCCCGACAUACUGAUAUUCUAUUUAUAGGUUUUUAGGUGGUGAUUCAUCUAAC
((((((((((((...((((.....)))))))))).))))))..(((((((((((.....((((...((((....))))...)))).))).))))).)))... ( -25.10)
>DroEre_CAF1 73230 102 - 1
GUGUUACAUUAAUUUCCCCGGGGUGGGAAUUAUUGUUACACAGGGAGGAUCCCAACAUGCUGAAGUUCUAUUUAUAGGUUUUUAGGUGGAGAUUCAUCUAAG
((((.(((.(((((((((....).)))))))).))).))))..(((((((((((.....((((((..(((....)))..)))))).))).))))).)))... ( -31.50)
>DroYak_CAF1 70508 101 - 1
GUGUUACAUCAAUUUUCCCGCGGUGGGAAUUAUUGCUAUACGGGGAGGAUCCCAACAUGCUGAUAAUCUAUUUUUAGGUUUUCAGCUGGAGAUUCAAAUAA-
..............((((((.((..(......)..))...))))))((((((((....(((((.((((((....)))))).)))))))).)))))......- ( -30.60)
>consensus
GUGUUACAUAAAUUUUCCCAGGCUGGGAAUUAUUGUAAUACAGGGAGGAUCCCAACAUACUGAUAUUCUAUUUAUAGGUUUUUAGGUGGUGAUUCAUCUAAC
((((((((......(((((.....)))))....)))))))).....((((((((.....((((...((((....))))...)))).))).)))))....... (-22.78 = -23.70 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:50 2006