Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,682,048 – 6,682,147 |
Length | 99 |
Max. P | 0.857579 |
Location | 6,682,048 – 6,682,147 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 76.76 |
Mean single sequence MFE | -23.23 |
Consensus MFE | -11.54 |
Energy contribution | -11.85 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.17 |
Mean z-score | -2.14 |
Structure conservation index | 0.50 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6682048 99 + 23771897 CUUUUCACAAUAUUCACCUGCCCC-GGAGGCAGUUACUUCUGCAUUGGUCCCUGCAAUUCAUUUUGGCAGAACUAUAGAAACUACUCAUACUUCACGCUC .................(((((..-.((.((((..(((........)))..))))...)).....))))).............................. ( -16.70) >DroSec_CAF1 58768 98 + 1 CUUUCCACAAUAUCCACCUGCCCC-GGUGGAAGUUUCUUCUGCAUUGGUCCUUGCAAUUCAUUUUGGCAGGACUAUGG-AACUACUCAUACUUCACGCUC ..(((((.....((((((......-))))))..............(((((((.((((......)).))))))))))))-))................... ( -24.50) >DroSim_CAF1 77046 98 + 1 CUUUUCACAAUAUCCACCUGCCCC-GGUGGCAGUUUCUUCUGCAUUGGUCCCUGCAAUUCAUUUUGGCAGGACUAUGG-AACUACUCAUACUUUACGCUC ............((((((((((..-((((((((......))))((((.......)))).))))..))))))....)))-).................... ( -22.10) >DroEre_CAF1 70659 98 + 1 AUA-UCACAAUAUCCACCUGCCCCAGGUGGCGGGUAAUUCUGCAUUGGUGCCUGCACUUCAUUUUGGCAGGACUACAG-AGGCACCCAUACUUCACGCUC ...-.........(((((((...))))))).((((..(((((...((((.(((((.(........)))))))))))))-))..))))............. ( -33.40) >DroYak_CAF1 67928 90 + 1 ---------AUAUCCACCUGCCCCAGGUGGCGGGUAAUUCUGCAUUGGUCCCUGCAAUUCCUUUUGGCAGGACUACAG-AAGCACUCAUACUUCACGCUC ---------....(((((((...))))))).((((..(((((...((((((.(((((......)).))))))))))))-))..))))............. ( -29.70) >DroAna_CAF1 65712 81 + 1 UUU---------UCCACCUGCCCC-GCUUGUGUUUAUUCCUGCACUCGUCC-AGCCAUUCAUUUUGGCAGCGCUAC--------UCCAAGUUUCACGCUU ...---------...........(-(((.((((........))))......-.((((.......))))))))....--------................ ( -13.00) >consensus CUU_UCACAAUAUCCACCUGCCCC_GGUGGCAGUUACUUCUGCAUUGGUCCCUGCAAUUCAUUUUGGCAGGACUACAG_AACUACUCAUACUUCACGCUC ................((((((.......((((......))))....((....))..........))))))............................. (-11.54 = -11.85 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:49 2006