Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,669,023 – 6,669,127 |
Length | 104 |
Max. P | 0.532947 |
Location | 6,669,023 – 6,669,127 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 90.80 |
Mean single sequence MFE | -28.47 |
Consensus MFE | -21.72 |
Energy contribution | -23.30 |
Covariance contribution | 1.58 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.76 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6669023 104 - 23771897 GAAAAGAAAACUCGGAUAAUUUGCUCAGGC------------GAUUGGGUAACCAGAUAUGGGAUGUACCAGUCUAGGGAGUUUUAAAAACAUUUUAAAAUAUUAUCCUCUUAAGC .............(((((((((((((((..------------..))))))))((((((.(((......))))))).))..((((((((.....)))))))))))))))........ ( -23.50) >DroSec_CAF1 45735 116 - 1 GAAAAGAAAACUCGGAUAAUUUGCUCAGGCGGCAAAGCCGUCGAUUAGGUAACCAGAUAUGGGAUGUACCAGUCUAGGGAUUUUUAAAAAGAUUUGAAAAUAUUAUCCUCUUAAGC .............(((((((...(((.((((((...))))))((((.((((.(((....)))....))))))))..)))(((((((((....))))))))))))))))........ ( -31.60) >DroSim_CAF1 63967 116 - 1 GAAAAGAAAACUCGGAUAAUUUGCUCAGGCGGCAAAGCCGUCGAUUAGGUAACCAGAUAUGGGAUGUACCAGUCUAGGGAGUUUUAAAAAGAUUUGAAAAUAUUAUCCUCUUAAGC .............(((((((..((((.((((((...))))))((((.((((.(((....)))....))))))))....))))((((((....))))))...)))))))........ ( -30.30) >consensus GAAAAGAAAACUCGGAUAAUUUGCUCAGGCGGCAAAGCCGUCGAUUAGGUAACCAGAUAUGGGAUGUACCAGUCUAGGGAGUUUUAAAAAGAUUUGAAAAUAUUAUCCUCUUAAGC .............(((((((...(((.((((((...))))))((((.((((.(((....)))....))))))))..)))..(((((((....)))))))..)))))))........ (-21.72 = -23.30 + 1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:44 2006