Locus 2374

Sequence ID 3L_DroMel_CAF1
Location 6,658,805 – 6,658,899
Length 94
Max. P 0.865813
window3660

overview

Window 0

Location 6,658,805 – 6,658,899
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 81.85
Mean single sequence MFE -16.17
Consensus MFE -13.45
Energy contribution -13.23
Covariance contribution -0.22
Combinations/Pair 1.19
Mean z-score -1.82
Structure conservation index 0.83
SVM decision value 0.85
SVM RNA-class probability 0.865813
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6658805 94 + 23771897
AGCUCACAGCAUGAGCAUACACCUUUUAAACACCUUUUUUUUGCUUUUUUCCUAUAUUUAUGUAUAUGGAAACAUUUACGGCAAGCUUCCGAUA
.(((((.....))))).......................((((((..((((((((((....))))).))))).......))))))......... ( -15.50)
>DroSec_CAF1 35639 82 + 1
AGCUCACAGCAUGAGCAUAUACCGUUCA------------UUGCAUUUUUUGUGUAUUUAUGUAUAUAGAAACAUUUACGGCAAGCUUUCAAUA
((((..(.((((((((.......)))))------------.)))..(((((((((((....)))))))))))........)..))))....... ( -17.40)
>DroSim_CAF1 53753 82 + 1
AGCUCACAGCAUGAGCAUAUACCAUUCA------------UUGCAUUUUUUGUGUAUUUAUGUAUAUGGAAACAUUUACUGCAAACUUCCAAUA
.(((((.....)))))............------------(((((......(((....)))(((.(((....))).)))))))).......... ( -15.60)
>consensus
AGCUCACAGCAUGAGCAUAUACCAUUCA____________UUGCAUUUUUUGUGUAUUUAUGUAUAUGGAAACAUUUACGGCAAGCUUCCAAUA
.(((((.....)))))........................(((((.(((((((((((....))))))))))).......))))).......... (-13.45 = -13.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:43 2006