| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,655,448 – 6,655,540 |
| Length | 92 |
| Max. P | 0.635722 |
| Location | 6,655,448 – 6,655,540 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.34 |
| Mean single sequence MFE | -20.63 |
| Consensus MFE | -15.08 |
| Energy contribution | -15.22 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6655448 92 - 23771897 AACUUGUCACAAAUUGCGCAUACGCCGCGUUGUCAACAACUCGGCAACAAACUC------CGACCAUAAAACCAAAGUCAAGUUCUACUUGC-------------UGUGGU .....(((.........(....)((((.((((....)))).)))).........------.)))......((((.((.((((.....)))))-------------).)))) ( -21.70) >DroPse_CAF1 26323 82 - 1 GACUUGUCAGAAAUUGCGCAUACGCCGCGUUGUCAGCAACU---CAACAAACUG------AGACCAUAAAACCAGAGUCAAGUCC--------------------UGCGGU ((((((.(.((....((((.......))))..)).....((---((......))------))..............).)))))).--------------------...... ( -17.40) >DroEre_CAF1 42408 92 - 1 AACUUGUCACAAAUUGCGCAUACGCCGCGUUGUCAAGAACUCGGCAACAAACUC------CGACCAUAAAACCAAAGUCAAGUUCUACUUGC-------------UGUAGU ((((((.(.......((((....).)))((((((........))))))......------................).))))))((((....-------------.)))). ( -18.60) >DroYak_CAF1 40769 92 - 1 AACUUGUCACAAAUUGCGCAUACGCCGCGUUGUCAAGAACUCGACAACAAACUC------CGACCAUAAAACCAAAGUCAAGUUCUACUUGC-------------UGUGGU .....(((.......((((....).)))((((((........))))))......------.)))......((((.((.((((.....)))))-------------).)))) ( -22.30) >DroAna_CAF1 37015 111 - 1 AACUUGUCACAAAUUGCGCAUACGCCGCGUUGUCAACAACUUGGCAACAAACUCGAACUCGAACCAUAAAACCAAAGUCAAGUUGCGUUAGCAUCACGGCGGCCUUAUGGU ...............((((....).)))((((((((....))))))))....(((....)))(((((((..((...(((....(((....)))....)))))..))))))) ( -26.40) >DroPer_CAF1 26416 82 - 1 GACUUGUCAGAAAUUGCGCAUACGCCGCGUUGUCAGCAACU---CAACAAACUG------AGACCAUAAAACCAGAGUCAAGUCC--------------------UGCGGU ((((((.(.((....((((.......))))..)).....((---((......))------))..............).)))))).--------------------...... ( -17.40) >consensus AACUUGUCACAAAUUGCGCAUACGCCGCGUUGUCAACAACUCGGCAACAAACUC______CGACCAUAAAACCAAAGUCAAGUUCUACUUGC_____________UGUGGU ((((((.(.......((((....).)))((((((........))))))............................).))))))........................... (-15.08 = -15.22 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:40 2006