Locus 2369

Sequence ID 3L_DroMel_CAF1
Location 6,633,106 – 6,633,196
Length 90
Max. P 0.693013
window3651

overview

Window 1

Location 6,633,106 – 6,633,196
Length 90
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.99
Mean single sequence MFE -20.55
Consensus MFE -13.89
Energy contribution -14.20
Covariance contribution 0.31
Combinations/Pair 1.17
Mean z-score -1.30
Structure conservation index 0.68
SVM decision value 0.33
SVM RNA-class probability 0.693013
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6633106 90 - 23771897
----------------------UACACAUUUCUUUCAAUUUACGAUUGCCAGAGCAAAUUGAAUUUGUUGCACUUCAGCACAGGUCACAAAGUGGAAAGAAACAAG-------GU-AAAA
----------------------(((...((((((((.((((....((((....))))..(((.(((((.((......))))))))))..)))).))))))))....-------))-)... ( -17.60)
>DroSec_CAF1 10149 90 - 1
----------------------UACACUUUUCUUUCAAUUUGCGAUUGCCGGAGCAAAAUGAAUUUGUUGCACUUCAGCACAGGCCACAAAGUGGAAAGAAACAAG-------GU-AAAA
----------------------(((.((((((((((..((((.(...(((..((((((.....))))))((......))...)))).))))...)))))))..)))-------))-)... ( -19.90)
>DroSim_CAF1 26083 90 - 1
----------------------UACACUUUUCUUUCAAUUUGCGAUUGCCGGAGCAAAUUGAAUUUGUUGCACUUCAGCACAGGCCACAAAGUGGAAAGAAAGGAG-------GU-AAAA
----------------------(((.(((((((((((((((((..........))))))))).(((((.((......)))))))((((...)))).))))))))..-------))-)... ( -24.20)
>DroEre_CAF1 20073 89 - 1
----------------------CACA-GUUCCUUUCAAUUUACGAUUGCCAAAGCAAAUUGAAUUUGCUGCACUUCAGCACAGGCCACCAAGUGGAACGAAACAAG-------GU-AAAA
----------------------....-(((((..((.......))..(((..(((((((...)))))))((......))...)))........)))))........-------..-.... ( -16.40)
>DroYak_CAF1 13494 111 - 1
GCCGCAUUUGAAUCGCCUCCUACACA-UUUUCUCUCAAUUUACGAUUGCCAAAGCAAAUUGAAUUUGUUGCACUUCAGCACAGGCCACAAAGUGGAAAGAAACAAG-------GU-AAAA
.((((.((((....((((.....(((-..(((..((.......))((((....))))...)))..)))(((......))).))))..))))))))...........-------..-.... ( -17.70)
>DroAna_CAF1 12461 98 - 1
----------------------CUUUAUUUUCUUGCCAUUUGCUAUUGCCAAAGCAAAUUGAAUUUGUUGCACUUCAGCCACGGCCACAAAGUGGCUCAAGAAGAGCAGCGCCGUGUAAA
----------------------..........((((((((((((........))))))).......(((((.((((((((((.........))))))...)))).)))))...).)))). ( -27.50)
>consensus
______________________CACACUUUUCUUUCAAUUUACGAUUGCCAAAGCAAAUUGAAUUUGUUGCACUUCAGCACAGGCCACAAAGUGGAAAGAAACAAG_______GU_AAAA
............................((((((((.((((......(((..((((((.....))))))((......))...)))....)))).)))))))).................. (-13.89 = -14.20 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:35 2006