Locus 2367

Sequence ID 3L_DroMel_CAF1
Location 6,627,649 – 6,627,743
Length 94
Max. P 0.723752
window3649

overview

Window 9

Location 6,627,649 – 6,627,743
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 93.83
Mean single sequence MFE -34.25
Consensus MFE -29.17
Energy contribution -28.70
Covariance contribution -0.47
Combinations/Pair 1.20
Mean z-score -1.73
Structure conservation index 0.85
SVM decision value 0.41
SVM RNA-class probability 0.723752
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6627649 94 - 23771897
UCGGUUGCCAAGAGUAAUUAGGGCAGUCGGAGGCAUUGGAUUGGAGCUCAAUGGGCAGAGCCAAGUGUUCUCAAGUGCCUCGACGAUGUGGCUG
.((..((((..((....))..))))..))((((((((......(((..((...(((...)))...))..))).))))))))............. ( -32.60)
>DroSec_CAF1 4707 94 - 1
UCGGUUGCCAAGAGUAAUUAGGGCAGUCGGAGGCAUUGGAUUGGAGCUCAAUGGGCAGAGCCAAGUGUUCUCAAGUGCCUCGACGAUGUGGCUG
.((..((((..((....))..))))..))((((((((......(((..((...(((...)))...))..))).))))))))............. ( -32.60)
>DroSim_CAF1 15815 94 - 1
UCGGUUGCCAAGAGUAAUUAGGGCAGUCGGAGGCAUUGGAUUGGAGCUCAAUGGGCAGAGCCAAGUGUUCUCAAGUGCCUCGACGAUGUGGCUG
.((..((((..((....))..))))..))((((((((......(((..((...(((...)))...))..))).))))))))............. ( -32.60)
>DroEre_CAF1 14386 94 - 1
UCGGUUGCCAAGAGUAAUUAGGGCAGUCGGAGGCAUUGGAUUGGAGCUCAAUGGUCAGAGCCAAGUGUUCUGAAGUGCCUCGACGAUGUGGCUG
.((..((((..((....))..))))..))((((((((...(..((((....((((....))))...))))..)))))))))............. ( -33.60)
>DroYak_CAF1 7352 94 - 1
UGGGUUGCCAAGAGUAAUUAGGGCAGUCGGAGGCAUUGGAUUGGAGCUCAAUGGUCGGAGCCAAGUGUUCUCAAGUGCCUCGACGAUGUGGCUG
..(((((((..((....))..))).((((.(((((((.....(((((....((((....))))...)))))..))))))))))).....)))). ( -31.00)
>DroAna_CAF1 6172 94 - 1
CCGGUUGCCAGGAGUAAUUAGGGCAGUCGGAGGCACUAGAUCGGAGCUCAAUGGGCCGGGGCAAGUGUCUUCAAGGGCCCCGACGAUGUGGCCG
(((..((((..((....))..))))..))).(((.(.(.((((..(((.....)))((((((...((....))...)))))).)))).))))). ( -43.10)
>consensus
UCGGUUGCCAAGAGUAAUUAGGGCAGUCGGAGGCAUUGGAUUGGAGCUCAAUGGGCAGAGCCAAGUGUUCUCAAGUGCCUCGACGAUGUGGCUG
.((((((((..((....))..))).(((((.((((((((((..(.((((........)))))....))))...))))))))))).....))))) (-29.17 = -28.70 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:33 2006