Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,626,192 – 6,626,295 |
Length | 103 |
Max. P | 0.972232 |
Location | 6,626,192 – 6,626,295 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.21 |
Mean single sequence MFE | -19.77 |
Consensus MFE | -13.78 |
Energy contribution | -13.34 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.14 |
Mean z-score | -2.14 |
Structure conservation index | 0.70 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6626192 103 + 23771897 ACAGACCACUAAACAGCACACAGGAGGG-CCUCGAAAGAGCAACGGUAUUGUCUCCAU---------------CCCCACAUUGCCCCUUUUUCCCCAUUUUCCCAUUUU-CCACCUCCAA ......................((((((-(.((....))))...((((.(((......---------------....))).))))........................-...))))).. ( -20.20) >DroSec_CAF1 3237 111 + 1 AUAGACCACUAAACAGCACACAGGAGGG-CCUCCAAAGAGCAACGGUAUUGUCUCCAUCAGUCCCCCAAACCGCCCCACUCUGCCCCUUUUUCCCUAU--------UUUCCCACCUCCAA ...............(((...((..(((-((((....)))....((.((((.......)))).)).......))))..)).)))..............--------.............. ( -15.30) >DroYak_CAF1 5235 119 + 1 ACAGACCACUAAACAGCACACAGGAGGUUGCUCCAAUGAGCAACGGCAUUGUCUCCAUCAGUUUUCCAAACUGCCCCACUUUGUCCCUUUUUCCCCAUUUCCCUAUUUU-CCACCUCCGA ......................(((((((((((....)))))))((((..((......(((((.....)))))....))..))))........................-....)))).. ( -23.80) >consensus ACAGACCACUAAACAGCACACAGGAGGG_CCUCCAAAGAGCAACGGUAUUGUCUCCAUCAGU___CCAAAC_GCCCCACUUUGCCCCUUUUUCCCCAUUU_CC_AUUUU_CCACCUCCAA ......................(((((...(((....)))....((((..((.........................))..))))............................))))).. (-13.78 = -13.34 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:32 2006