Locus 2365

Sequence ID 3L_DroMel_CAF1
Location 6,625,251 – 6,625,369
Length 118
Max. P 0.661394
window3647

overview

Window 7

Location 6,625,251 – 6,625,369
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.68
Mean single sequence MFE -31.33
Consensus MFE -28.55
Energy contribution -28.68
Covariance contribution 0.13
Combinations/Pair 1.07
Mean z-score -1.54
Structure conservation index 0.91
SVM decision value 0.27
SVM RNA-class probability 0.661394
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6625251 118 - 23771897
CCUUGGGUUUUUAGUUUUAGCCCGGUUCAAGUGCGGAUAUUUUAUGAAUUUUAUACGCUGCUUGAACUGCCUUGGUCAACAUGCCUUGGCCAUAUUUGGUCCACUUUUGCGCAGCCCC--
....((((.....(((...((((((((((((((((.(((............))).))).))))))))))....))).))).((((.((((((....))).))).....).))))))).-- ( -31.50)
>DroSec_CAF1 2288 118 - 1
CCUUGGGUUUUUAGUUUUAGCCCGGUUCAAGUGCGGAUAUUUUUUGAAUUUUAUACGCUGCUUGAACUGCCUUGGUCAACAUGACUUGGCCAUAUUUGGUCCACUUUUGAGCCGCACC--
....(((((.........)))))((((((((((((.(((............))).))).)))))))))((..(((((((......))))))).....((..((....))..))))...-- ( -33.40)
>DroSim_CAF1 10429 118 - 1
CCUUGGGUUUUUAGUUUUAGCCCGGUACAAGUGCGGAUAUUUUAUGAAUUUUAUACGCUGCUUGAACUGCCUUGGUCAACAUGCCUUGGCCAUAUUUGGUCCACUUUUGCGCCGCUCC--
....(((((.........)))))((..((((.(.((((....((((...((((.........))))..(((..(((......)))..)))))))....)))).).))))..)).....-- ( -28.80)
>DroYak_CAF1 4324 120 - 1
CCUUGGGUUUUUAGUUUUAGCCCAGUUCAAGUGCGGAUAUUUUAUGAAUUUUAUACGCUGCUUGAACUGCCUUGGUCAACAUGCCUCGACCAUAUUUGGUCCACUUUUGCGCCACACCCC
....((((..............(((((((((((((.(((............))).))).))))))))))...((((...((......(((((....)))))......)).)))).)))). ( -31.60)
>consensus
CCUUGGGUUUUUAGUUUUAGCCCGGUUCAAGUGCGGAUAUUUUAUGAAUUUUAUACGCUGCUUGAACUGCCUUGGUCAACAUGCCUUGGCCAUAUUUGGUCCACUUUUGCGCCGCACC__
....(((((.........)))))((((((((((((.(((............))).))).)))))))))(((.(((((((......))))))).....))).................... (-28.55 = -28.68 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:31 2006