Locus 2363

Sequence ID 3L_DroMel_CAF1
Location 6,624,724 – 6,624,843
Length 119
Max. P 0.950833
window3644

overview

Window 4

Location 6,624,724 – 6,624,843
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.79
Mean single sequence MFE -37.56
Consensus MFE -30.30
Energy contribution -31.54
Covariance contribution 1.24
Combinations/Pair 1.03
Mean z-score -2.03
Structure conservation index 0.81
SVM decision value 1.41
SVM RNA-class probability 0.950833
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6624724 119 + 23771897
UUGUGCUGAAAACUUGAAGCAUUUUGCGGUCUGCGCAGGUCCCUUUGGCCAGGGACUUGAAAUGUUGGC-GGGCCGUACAUAAAUAAAUUACAUUUGUUGCUCAUUAAGCAUUGAGUGGC
..(((((..........)))))..((((((((((.(((((((((......)))))))))........))-))))))))..................((..((((........))))..)) ( -41.00)
>DroSec_CAF1 1760 119 + 1
UUGUGCUGAAAACUUGAAGCAUUUUGCGGUCUGCGCAGGUCCCUUUGGCCAGGGACUUGAAAUGUUGGC-GGGCCGUACAUAAAUAAAUUACAUUUGUUGCUCAUUAAGCAUUGAGUGGC
..(((((..........)))))..((((((((((.(((((((((......)))))))))........))-))))))))..................((..((((........))))..)) ( -41.00)
>DroSim_CAF1 9901 119 + 1
UUGUGCUGAAAACUUGAAGCAUUUUGCGGUCUGCGCAGGUCCCUUUGGCCAGGGACUUGAAAUGUUGGC-GGGCCGUACAUAAAUAAAUUACAUUUGUUGCUCAUUAAGCAUUGAGUGGC
..(((((..........)))))..((((((((((.(((((((((......)))))))))........))-))))))))..................((..((((........))))..)) ( -41.00)
>DroYak_CAF1 3796 119 + 1
UUGUGCUGAAAACUUGAAGCAUUUUGCGGUCUGCGCAGGUCCCAUUGGCCAGGGACUUGAAAUGUUGGC-GGGCCGUACAUAAAUAAAUUACAUUUGUUGCUCAUUAAGCAUUGAGUGGC
..(((((..........)))))..((((((((((.((((((((........))))))))........))-))))))))..................((..((((........))))..)) ( -40.10)
>DroAna_CAF1 2029 104 + 1
UUGUGCUGAAAACUUGAAGCAUUUUGCGGUGUGCGCAGGACCAA--GG-------CUCG-------GGCUGGCUCGUACAUAAAUAAAUUACAUUUGUUGCUCAUUAAGCAUUGAGUGGC
.(((((.(..(.(((((.((.(((((((.....)))))))....--.)-------))))-------)).)..)..)))))................((..((((........))))..)) ( -24.70)
>consensus
UUGUGCUGAAAACUUGAAGCAUUUUGCGGUCUGCGCAGGUCCCUUUGGCCAGGGACUUGAAAUGUUGGC_GGGCCGUACAUAAAUAAAUUACAUUUGUUGCUCAUUAAGCAUUGAGUGGC
..(((((..........)))))..((((((((((.((((((((........))))))))........)).))))))))..................((..((((........))))..)) (-30.30 = -31.54 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:28 2006