Locus 236

Sequence ID 3L_DroMel_CAF1
Location 641,639 – 641,731
Length 92
Max. P 0.714971
window350

overview

Window 0

Location 641,639 – 641,731
Length 92
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 81.82
Mean single sequence MFE -37.04
Consensus MFE -26.64
Energy contribution -28.88
Covariance contribution 2.24
Combinations/Pair 1.04
Mean z-score -1.74
Structure conservation index 0.72
SVM decision value 0.38
SVM RNA-class probability 0.714971
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 641639 92 + 23771897
AAAGUGGGGCUGUGGCCGCUGCGACGAUGGCGUUGAUAACUUCAUACGCAAAGGGCAGAGCUGCA--------------UCUUAGCCACCGCCGGGUGGCUCAACC
.(((((.((((.((.((..((((...((((.((.....)).)))).))))..)).)).)))).))--------------.)))(((((((....)))))))..... ( -37.90)
>DroSec_CAF1 8974 92 + 1
AAAGUGGGGCUGUGGCCGCUGCGACGAUGGCGUUGAUAACUUCAUACGCAAAGGGCAGAGCCGCG--------------UCUUAGCCACCGCCGGGUGGCUCAACC
.(((((.((((.((.((..((((...((((.((.....)).)))).))))..)).)).)))).))--------------.)))(((((((....)))))))..... ( -39.40)
>DroSim_CAF1 11473 92 + 1
AAAGUGGGGCUGUGGCCGCUGCGACGAUGGCGUUGAUAACUUCAUACGCAAAGGGCAGAGCCGCG--------------UCUUAGCCACCGCCGGGUGGCUCAACC
.(((((.((((.((.((..((((...((((.((.....)).)))).))))..)).)).)))).))--------------.)))(((((((....)))))))..... ( -39.40)
>DroEre_CAF1 11833 73 + 1
AAAGUGGGGCUGUGGCCGC-----------CGUUGAUAACUUCAUACGCAAAGGGCAGAGCCCCG--------------ACUUAGCCACCGCCGGGUG--------
.((((((((((.((.((..-----------((((((.....))).)))....)).)).)))))).--------------))))...((((....))))-------- ( -31.00)
>DroYak_CAF1 9059 98 + 1
GAAGUGGGGCUGUGGCCGCUGCGACGAUGGCGUUGAUAACUUCAUACGCAAAGGGCAGAGCCCCGCCACUAACUGAACCACUGAGCCACCGCCGGGUG--------
...((((((((.((.((..((((...((((.((.....)).)))).))))..)).)).))))))))............((((..((....))..))))-------- ( -37.50)
>consensus
AAAGUGGGGCUGUGGCCGCUGCGACGAUGGCGUUGAUAACUUCAUACGCAAAGGGCAGAGCCGCG______________UCUUAGCCACCGCCGGGUGGCUCAACC
.....(.((((.((.((..((((...((((.((.....)).)))).))))..)).)).)))).)....................((((((....))))))...... (-26.64 = -28.88 +   2.24) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:03 2006