Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 641,639 – 641,731 |
Length | 92 |
Max. P | 0.714971 |
Location | 641,639 – 641,731 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -37.04 |
Consensus MFE | -26.64 |
Energy contribution | -28.88 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.74 |
Structure conservation index | 0.72 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 641639 92 + 23771897 AAAGUGGGGCUGUGGCCGCUGCGACGAUGGCGUUGAUAACUUCAUACGCAAAGGGCAGAGCUGCA--------------UCUUAGCCACCGCCGGGUGGCUCAACC .(((((.((((.((.((..((((...((((.((.....)).)))).))))..)).)).)))).))--------------.)))(((((((....)))))))..... ( -37.90) >DroSec_CAF1 8974 92 + 1 AAAGUGGGGCUGUGGCCGCUGCGACGAUGGCGUUGAUAACUUCAUACGCAAAGGGCAGAGCCGCG--------------UCUUAGCCACCGCCGGGUGGCUCAACC .(((((.((((.((.((..((((...((((.((.....)).)))).))))..)).)).)))).))--------------.)))(((((((....)))))))..... ( -39.40) >DroSim_CAF1 11473 92 + 1 AAAGUGGGGCUGUGGCCGCUGCGACGAUGGCGUUGAUAACUUCAUACGCAAAGGGCAGAGCCGCG--------------UCUUAGCCACCGCCGGGUGGCUCAACC .(((((.((((.((.((..((((...((((.((.....)).)))).))))..)).)).)))).))--------------.)))(((((((....)))))))..... ( -39.40) >DroEre_CAF1 11833 73 + 1 AAAGUGGGGCUGUGGCCGC-----------CGUUGAUAACUUCAUACGCAAAGGGCAGAGCCCCG--------------ACUUAGCCACCGCCGGGUG-------- .((((((((((.((.((..-----------((((((.....))).)))....)).)).)))))).--------------))))...((((....))))-------- ( -31.00) >DroYak_CAF1 9059 98 + 1 GAAGUGGGGCUGUGGCCGCUGCGACGAUGGCGUUGAUAACUUCAUACGCAAAGGGCAGAGCCCCGCCACUAACUGAACCACUGAGCCACCGCCGGGUG-------- ...((((((((.((.((..((((...((((.((.....)).)))).))))..)).)).))))))))............((((..((....))..))))-------- ( -37.50) >consensus AAAGUGGGGCUGUGGCCGCUGCGACGAUGGCGUUGAUAACUUCAUACGCAAAGGGCAGAGCCGCG______________UCUUAGCCACCGCCGGGUGGCUCAACC .....(.((((.((.((..((((...((((.((.....)).)))).))))..)).)).)))).)....................((((((....))))))...... (-26.64 = -28.88 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:03 2006