| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,621,155 – 6,621,265 |
| Length | 110 |
| Max. P | 0.529531 |
| Location | 6,621,155 – 6,621,265 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 99.39 |
| Mean single sequence MFE | -32.37 |
| Consensus MFE | -31.43 |
| Energy contribution | -31.43 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.97 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6621155 110 - 23771897 UAAAAGCCUCAAGUUAUUUGUUGCAUGCCCUCUGCUAAUGCACAUUUUAUUGAAAUAAAUUCCGUGCCGGCGGCUCACGGCUGGCACGCUGAUCCACUGGCACUUUGGUG .....(((((((...(..(((.((((((.....))..)))))))..)..))))..........(((((((.((.(((((.......)).))).)).)))))))...))). ( -31.10) >DroSim_CAF1 3519 110 - 1 UAAAAGCCUCAAGUUAUUUGUUGCAUGCCCUCUGCUAAUGCACAUUUUAUUGAAAUAAAUUCCGUGCCGGCGGCUCACGGCUGGCCCGCUGAUCCACUGGCACUUUGGUG .....(((((((...(..(((.((((((.....))..)))))))..)..))))..........(((((((.((.((((((.....))).))).)).)))))))...))). ( -33.00) >DroYak_CAF1 131 110 - 1 UAAAAGCCUCAAGUUAUUUGUUGCAUGCCCUCUGCUAAUGCACAUUUUAUUGAAAUAAAUUCCGUGCCGGCGGCUCACGGCUGGCCCGCUGAUCCACUGGCACUUUGGUG .....(((((((...(..(((.((((((.....))..)))))))..)..))))..........(((((((.((.((((((.....))).))).)).)))))))...))). ( -33.00) >consensus UAAAAGCCUCAAGUUAUUUGUUGCAUGCCCUCUGCUAAUGCACAUUUUAUUGAAAUAAAUUCCGUGCCGGCGGCUCACGGCUGGCCCGCUGAUCCACUGGCACUUUGGUG .....(((((((...(..(((.((((((.....))..)))))))..)..))))..........(((((((.((.(((((.......)).))).)).)))))))...))). (-31.43 = -31.43 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:20 2006