Locus 2357

Sequence ID 3L_DroMel_CAF1
Location 6,613,141 – 6,613,237
Length 96
Max. P 0.935865
window3635

overview

Window 5

Location 6,613,141 – 6,613,237
Length 96
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 75.65
Mean single sequence MFE -21.44
Consensus MFE -15.60
Energy contribution -16.52
Covariance contribution 0.92
Combinations/Pair 1.09
Mean z-score -1.51
Structure conservation index 0.73
SVM decision value 1.25
SVM RNA-class probability 0.935865
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6613141 96 - 23771897
CCAUUUCAAUUAUGUGCAACGCGGCGUAUGCACAAUGUUGUAAUGAAAUGGGCACAUAGCCCAGCCUCCGCUUUUCCCCAACAACC---UUUUUGGCCC
.((((.((((..(((((((((...))).))))))..)))).))))...(((((.....)))))(((....................---.....))).. ( -24.61)
>DroVir_CAF1 23395 82 - 1
CCAUUUCAAUUAUGUGCAACGCGGCGUAUGAACAAUGUUGUAAUGAAAUGGGCACACAGGC-AGC--------ACCAGCAAA-AGC---A----ACAGC
((((((((.((((((((......))))))))(((....)))..))))))))((.....((.-...--------.)).((...-.))---.----...)) ( -16.70)
>DroSim_CAF1 8160 99 - 1
CCAUUUCAAUUAUGUGCAACGCGGCGUAUGCACAAUGUUGUAAUGAAAUGGGCACAUAGCCCAGCCUCCGCUUUUCCCCGACACCCACUGUUUUUGCCC
.((((.((((..(((((((((...))).))))))..)))).))))...(((((.....)))))((....))........((((.....))))....... ( -22.60)
>DroEre_CAF1 13154 84 - 1
CCAUUUCAAUUAUGUGCAACGCGGCGUAUGCACAAUGUUGUAAUGAAAUGGGCACAUAGCCCAACCGACCCCUUUUCC---------------UCCUCC
.((((.((((..(((((((((...))).))))))..)))).))))...(((((.....)))))...............---------------...... ( -22.40)
>DroYak_CAF1 8385 92 - 1
CCAUUUCAAUUAUGUGCAACGCGGCGUAUGCACAAUGUUGUAAUGAAAUGGGCACAUAGCACAGCCUUCGCUUUACCCCAA--ACC---CU--UUCGCC
.((((.((((..(((((((((...))).))))))..)))).))))...((((.....(((.........)))....)))).--...---..--...... ( -20.80)
>DroAna_CAF1 15047 77 - 1
CCAUUUCAAUUAUGUGCAACGCGGCGUAUGCGCAAUGUUGUAAUGAAAUGGGCACAUAGU-----------UGUUCCA---CA------CU--CUCGCC
.(((((((......(((((((..(((....)))..))))))).)))))))((.(((....-----------))).)).---..------..--...... ( -21.50)
>consensus
CCAUUUCAAUUAUGUGCAACGCGGCGUAUGCACAAUGUUGUAAUGAAAUGGGCACAUAGCCCAGCCU_CGCUUUUCCCCAAC_ACC___CU__UUCCCC
.((((.((((..(((((((((...))).))))))..)))).))))...(((((.....))))).................................... (-15.60 = -16.52 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:19 2006