Locus 2355

Sequence ID 3L_DroMel_CAF1
Location 6,609,690 – 6,609,790
Length 100
Max. P 0.837308
window3633

overview

Window 3

Location 6,609,690 – 6,609,790
Length 100
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -27.65
Consensus MFE -15.32
Energy contribution -14.72
Covariance contribution -0.61
Combinations/Pair 1.32
Mean z-score -2.57
Structure conservation index 0.55
SVM decision value 0.74
SVM RNA-class probability 0.837308
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6609690 100 + 23771897
UAUGU--U----UUUUGUGGCCUAAUUUGCACAUUGUUUGCUAGCAUUUUUGGUUGGUUUGC---UGGCA-AGUGCUUAGAGGCUUUGUUAAUUUGUACAUACAA-GAGCG
...((--(----(((.(((((((.....((((.....(((((((((..((.....))..)))---)))))-)))))....))))..(((........))))))))-)))). ( -28.50)
>DroPse_CAF1 12293 109 + 1
UUGGUG-UGCGAGAUUGCGGCCUAAUUUGCACAUUGUUUGUUAACAUUUUUGGUUGGUUUGUUUUUGGCAAAGUGCUUUGGGGCUUUGUUAAUUUGUA-AUACAACGAAUG
..((((-(((.((((((.....)))))))))))))..............((.((((..(((...((((((((((.(....).))))))))))....))-)..)))).)).. ( -25.60)
>DroSim_CAF1 4466 102 + 1
UUUUUUGU----UUUUGUAGCCUAAUUUGCACAUUGUUUGCUAGCAUUUUUGGUUGGUUUGC---UGGCA-AGUGCUUAGAGGCUUUGUUAAUUUGUACAUACAA-GAGCG
......((----(((((((((((.....((((.....(((((((((..((.....))..)))---)))))-)))))....))))..(((........))))))))-)))). ( -32.80)
>DroEre_CAF1 9320 100 + 1
-UUUUU-U----UUUGCUGGCCUAAUUUGCACAUUAUUUGCUAGCAUUUUUGGUUGGUUUGC---UGGCA-AGUGCUUAGAGGCUUUGUUAAUUUGCACAUACAA-GAGCG
-.....-.----...((((((((.....((((.....(((((((((..((.....))..)))---)))))-)))))....))))).(((......))).......-.))). ( -27.70)
>DroYak_CAF1 4571 101 + 1
UUUUUU-U----AUUUGUGGCCUAAUUUGCACAUUGUUUGCCAGCGUUUUUGGUCGGUUUGC---UGGCA-AGUGCUUAGGGGCUUUGCUAAUUUGUACAUACAA-GUGAG
.....(-(----(((((((((((.....((((.....(((((((((..((.....))..)))---)))))-)))))....))))..(((......)))..)))))-)))). ( -31.80)
>DroAna_CAF1 11421 90 + 1
UCCGGU-U----AUUUGUGGCCUAAUUUGCACAUUGUUUGUUAGC-UUUUUGGUCGGUUGGC---CGGCA-AGUACUUAGAGGCUUUGUCGAUUUGUUCA-----------
...(((-(----(....)))))......(((.((((......(((-((((..(((((....)---)))).-.......)))))))....)))).)))...----------- ( -19.50)
>consensus
UUUGUU_U____UUUUGUGGCCUAAUUUGCACAUUGUUUGCUAGCAUUUUUGGUUGGUUUGC___UGGCA_AGUGCUUAGAGGCUUUGUUAAUUUGUACAUACAA_GAGCG
..................(((((.....((((......((((((((..((.....))..)))...)))))..))))....))))).......................... (-15.32 = -14.72 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:17 2006