| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,607,514 – 6,607,628 |
| Length | 114 |
| Max. P | 0.645808 |
| Location | 6,607,514 – 6,607,628 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.51 |
| Mean single sequence MFE | -39.85 |
| Consensus MFE | -19.11 |
| Energy contribution | -17.95 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6607514 114 - 23771897 UGCUAUCCUUCCGGCAAUCGAAGGAGGUGUAAUAUCGCAUCCCUGCUGCAUAAAAGCAGCCAAGGAAUACCAAAAGGAGUUCAGCAUAGUGAACUCAUUAGGUGGAACUG---GA---GG .......(((((((...((..(((.(((((......))))))))(((((......)))))....)).((((.....(((((((......)))))))....))))...)))---))---)) ( -36.50) >DroVir_CAF1 14895 117 - 1 UGCAAUGCGCCCAGCUAUCGAGGGUGGUGUCAAAUCGCAGCCUUGCUGCAUAAAUGCGGCUAGCGAAUACCAAAAGGAGUUGAGCAAACUAAACUCAUUCAUUGGCACCG---CAGCUGG .((.....))((((((.......((((((((((.((((......((((((....))))))..))))..........(((((.((....)).))))).....)))))))))---))))))) ( -40.31) >DroGri_CAF1 11071 111 - 1 UGCAAUACGUCCGGCUACCGAUGGUGGUGUCAUAUCGCAGCCCUGCUGCAUAAAUGCUGCCAGCGAAUACCAAAAUGAGUUGAGUAAACUGAAUUCAUUGGGGGCCAAUG---C------ ............(((...((.(((..((((..(((.(((((...)))))))).))))..))).))....((..((((((((.((....)).))))))))..)))))....---.------ ( -37.10) >DroWil_CAF1 28107 114 - 1 UGCAAUGCGUCCAGCAAUCGACGGUGGCGACAGGUCGCAACCCUGUUGCAUGAAGGCAGCAAGGGAGUACCAGAACGAGUUGAGCAAACUGAAAUCGUUGGUUGGGUCAG---GA---GU ........(((((((.......((((((((....))))..(((((((((......))))).))))..))))..(((((.((.((....)).)).))))).)))))).)..---..---.. ( -36.90) >DroMoj_CAF1 10082 120 - 1 AGCAAUGCGUCCGGCUAUCGAGGGCGGUGUCAGGUCGCAGCCCUGCUGCAUGAAGGCAGCCAGCGAGUACCAAAACGAGUUGAGCAGACUAAACUCGUUGAGUGGUGCUGCUGCUGCUGG ((((.((((.(((((.((((....))))))).)).))))....)))).......((((((.(((.(((((((.((((((((.((....)).))))))))...)))))))))))))))).. ( -54.00) >DroAna_CAF1 8902 114 - 1 UGCAAUUCUUCCGGCGAUGGAGGGAGGUGUCAAAUCGCAUCCUUGCUGCAUGAAAGCGGCCAGGGAAUACCAGAAGGAGUUGAGCAGACUGAAUUCAUUAGGCGGAACUG---GA---GG .......(((((((..(((.((.(((((((......))).)))).)).))).....(.(((.((.....)).....(((((.((....)).)))))....))).)..)))---))---)) ( -34.30) >consensus UGCAAUGCGUCCGGCUAUCGAGGGUGGUGUCAAAUCGCAGCCCUGCUGCAUAAAAGCAGCCAGCGAAUACCAAAAGGAGUUGAGCAAACUGAACUCAUUGGGUGGAACUG___CA___GG .......(((............(((.(((......))).)))..(((((......)))))..)))...........(((((.((....)).)))))........................ (-19.11 = -17.95 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:16 2006