Locus 2353

Sequence ID 3L_DroMel_CAF1
Location 6,605,278 – 6,605,398
Length 120
Max. P 0.969271
window3631

overview

Window 1

Location 6,605,278 – 6,605,398
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.33
Mean single sequence MFE -38.05
Consensus MFE -31.94
Energy contribution -32.19
Covariance contribution 0.25
Combinations/Pair 1.03
Mean z-score -2.71
Structure conservation index 0.84
SVM decision value 1.64
SVM RNA-class probability 0.969271
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6605278 120 - 23771897
AUGCGCUUUUUGCUAAAGCGACCCAAAUCCUCCAGCGUGUGCAAAAAUUCAAUGGCCAUCGUUACGUUGGCGAUGCGUUUCACCAUUUGCACACGGAACGUUUCAUUUCCGGGCUUCAGU
...((((((.....)))))).(((............(((((((((........((((((((((.....))))))).)))......)))))))))((((........)))))))....... ( -36.04)
>DroVir_CAF1 12314 120 - 1
AUGCGCUUUUUGCUGAAACGCCCCAAAUCCUCCAUCGUGUGCAAAAAUUCAAUGGCCAUCGUUACGUUGGCGAUGCGUUUGACCAUUUGCACACGAAAUGUUUCAUUUCCGGGCUUCAGU
...........((((((..((((.............(((((((((...((((..(((((((((.....))))))).))))))...)))))))))((((((...)))))).)))))))))) ( -39.70)
>DroGri_CAF1 8467 120 - 1
AUGCGCUUUUUGCUGAACCGCCCCAAAUCCUCCAUCGUGUGCAAAAAUUCAAUGGCCAUCGUUACGUUGGCGAUGCGUUUGACCAUUUGCACACGAAAUGUUUCAUUUCCGGGCUUCAGU
...........((((((..((((.............(((((((((...((((..(((((((((.....))))))).))))))...)))))))))((((((...)))))).)))))))))) ( -39.70)
>DroWil_CAF1 26094 120 - 1
AUGCGCUUUUUGCUGAAUCGUCCCAAAUCCUCCAGCGUGUGCAAAAAUUCAAUGGCCAUAGUUACGUUGGCAAUGCGUUUUACCAUUUGCACACGGAAUGUUUCAUUUCCGGGCUUCAGU
...........((((((..((((.............((((((((((((.((...((((.........))))..)).)))......)))))))))((((........)))))))))))))) ( -31.70)
>DroMoj_CAF1 7361 120 - 1
AUGCGCUUUUUGCUGAAGCGCCCCAAAUCCUCCAUCGUGUGCAAAAAUUCAAUGGCCAUCGUUACGUUGGCGAUGCGUUUGACCAUUUGCACACGAAAUGUUUCAUUUCCGGGCUUCAGU
...........((((((((.((..............(((((((((...((((..(((((((((.....))))))).))))))...)))))))))((((((...)))))).)))))))))) ( -41.30)
>DroAna_CAF1 6629 120 - 1
AUGCGCUUUUUGCUGAAACGGCCCAAAUCCUCCAGAGUGUGCAAAAACUCAAUGGCCAUCGUUACGUUGGCGAUGCGUUUCACCAUUUGCACACGGAAUGUUUCAUUUCCGGGCUUCAGU
...........(((((...(((((............(((((((((........((((((((((.....))))))).)))......)))))))))((((........)))))))))))))) ( -39.84)
>consensus
AUGCGCUUUUUGCUGAAACGCCCCAAAUCCUCCAGCGUGUGCAAAAAUUCAAUGGCCAUCGUUACGUUGGCGAUGCGUUUGACCAUUUGCACACGAAAUGUUUCAUUUCCGGGCUUCAGU
...........((((((..(.(((............(((((((((........((((((((((.....))))))).)))......)))))))))((((((...)))))).)))))))))) (-31.94 = -32.19 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:15 2006