Locus 2351

Sequence ID 3L_DroMel_CAF1
Location 6,600,026 – 6,600,139
Length 113
Max. P 0.999859
window3625 window3626

overview

Window 5

Location 6,600,026 – 6,600,139
Length 113
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -37.50
Consensus MFE -33.96
Energy contribution -34.00
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.74
Structure conservation index 0.91
SVM decision value 1.94
SVM RNA-class probability 0.983351
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6600026 113 + 23771897
GUGCUACCUG--UUCAGGUACCAUGCAAAAGCGCAGCACAAAAUUGCUGCAUCAACACUUCGUUUGCGCUUUUUGUUGUUGCCUGUCGGGGCGGCUUUUCUCGCUACUUGCUAGU---
..(((.((((--..((((((.((.((((((((((((((......))))))...(((.....)))...)).)))))))).)))))).))))..)))....((.((.....)).)).--- ( -36.40)
>DroSec_CAF1 62980 113 + 1
GUGCUACCUG--UUCAGCUGCCAUGCAAAAGCGCAGCACAAAAUUGCUGCAUCAACACUUCGUUUGCGCUUUUUGUUGUUGCCUGUCGGGGCGGCUUUUCUCGCUACUUGCUAGU---
..((((....--...(((((((.......((.(((((((((((..((.(((..(((.....)))))))).))))).)))))))).....)))))))......((.....))))))--- ( -32.00)
>DroSim_CAF1 63165 113 + 1
GUGCUACCUG--UUCAGGUGCCAUGCAAAAGCGCAGCACAAAAUUGCUGCAUCAACACUUCGUUUGCGCUUUUUGUUGUUGCCUGUCGGGGCGGCUUUUCUCGCUACUUGCUAGU---
..(((.((((--..(((((..((.((((((((((((((......))))))...(((.....)))...)).))))))))..))))).))))..)))....((.((.....)).)).--- ( -36.10)
>DroEre_CAF1 63238 113 + 1
GUGCUACCUG--UUCAGGUGGCAUGCAAAAGCGCAGCACAAAAUUGCUGCAUCAACACUUCGUUUGCGCUUUUUGUUGUUGCCUGUCGGGGCGGCUUUUCUCGCUGCUUGCUAGU---
..((..((((--..((((..(((.((((((((((((((......))))))...(((.....)))...)).)))))))))..)))).))))(((((.......)))))..))....--- ( -43.60)
>DroYak_CAF1 64876 118 + 1
GUGCUACCUGUGUUCAGGUGCCAUGCAAAAGCGCAGCACAAAAUUGCUGCAUCAACACUUCGUUUGCGCUUUUUGUUGUUGCCUGUCGGGGCGGCUUUCCUCGCUACUUGCAGGUGUG
(((.((((((....)))))).)))((((((((((((((......))))))...(((.....)))...)).))))))....((((((.(((((((......))))).)).))))))... ( -39.40)
>consensus
GUGCUACCUG__UUCAGGUGCCAUGCAAAAGCGCAGCACAAAAUUGCUGCAUCAACACUUCGUUUGCGCUUUUUGUUGUUGCCUGUCGGGGCGGCUUUUCUCGCUACUUGCUAGU___
..(((.((((....(((((..((.((((((((((((((......))))))...(((.....)))...)).))))))))..))))).))))..)))....((.((.....)).)).... (-33.96 = -34.00 +   0.04)

alignment

Postscript

secondary structure

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dotplot

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Window 6

Location 6,600,026 – 6,600,139
Length 113
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 95.83
Mean single sequence MFE -36.86
Consensus MFE -34.92
Energy contribution -35.16
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -2.47
Structure conservation index 0.95
SVM decision value 4.28
SVM RNA-class probability 0.999859
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6600026 113 - 23771897
---ACUAGCAAGUAGCGAGAAAAGCCGCCCCGACAGGCAACAACAAAAAGCGCAAACGAAGUGUUGAUGCAGCAAUUUUGUGCUGCGCUUUUGCAUGGUACCUGAA--CAGGUAGCAC
---.((.((.....)).))....((..((....((((...((...(((((((((.(((((((((((...)))).)))))))..)))))))))...))...))))..--..))..)).. ( -36.10)
>DroSec_CAF1 62980 113 - 1
---ACUAGCAAGUAGCGAGAAAAGCCGCCCCGACAGGCAACAACAAAAAGCGCAAACGAAGUGUUGAUGCAGCAAUUUUGUGCUGCGCUUUUGCAUGGCAGCUGAA--CAGGUAGCAC
---.((.((.....)).))....((((((......))).......(((((((((.(((((((((((...)))).)))))))..)))))))))....))).((((..--....)))).. ( -35.30)
>DroSim_CAF1 63165 113 - 1
---ACUAGCAAGUAGCGAGAAAAGCCGCCCCGACAGGCAACAACAAAAAGCGCAAACGAAGUGUUGAUGCAGCAAUUUUGUGCUGCGCUUUUGCAUGGCACCUGAA--CAGGUAGCAC
---...........((.......((((((......))).......(((((((((.(((((((((((...)))).)))))))..)))))))))....)))((((...--.)))).)).. ( -36.40)
>DroEre_CAF1 63238 113 - 1
---ACUAGCAAGCAGCGAGAAAAGCCGCCCCGACAGGCAACAACAAAAAGCGCAAACGAAGUGUUGAUGCAGCAAUUUUGUGCUGCGCUUUUGCAUGCCACCUGAA--CAGGUAGCAC
---....((..(((((.......(((.........))).......(((((((((.(((((((((((...)))).)))))))..))))))))))).))).((((...--.)))).)).. ( -36.10)
>DroYak_CAF1 64876 118 - 1
CACACCUGCAAGUAGCGAGGAAAGCCGCCCCGACAGGCAACAACAAAAAGCGCAAACGAAGUGUUGAUGCAGCAAUUUUGUGCUGCGCUUUUGCAUGGCACCUGAACACAGGUAGCAC
....(((((.....)).)))...((((((......))).......(((((((((.(((((((((((...)))).)))))))..)))))))))....)))(((((....)))))..... ( -40.40)
>consensus
___ACUAGCAAGUAGCGAGAAAAGCCGCCCCGACAGGCAACAACAAAAAGCGCAAACGAAGUGUUGAUGCAGCAAUUUUGUGCUGCGCUUUUGCAUGGCACCUGAA__CAGGUAGCAC
..............((.......((((((......))).......(((((((((.(((((((((((...)))).)))))))..)))))))))....)))(((((....))))).)).. (-34.92 = -35.16 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:10 2006