Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,598,705 – 6,598,806 |
Length | 101 |
Max. P | 0.999021 |
Location | 6,598,705 – 6,598,806 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 80.61 |
Mean single sequence MFE | -41.12 |
Consensus MFE | -22.85 |
Energy contribution | -26.01 |
Covariance contribution | 3.16 |
Combinations/Pair | 1.07 |
Mean z-score | -3.94 |
Structure conservation index | 0.56 |
SVM decision value | 3.25 |
SVM RNA-class probability | 0.998846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6598705 101 + 23771897 AUGCGGAAAAGGAGCAGUGGCAUGAGCA------GAAAUUGUCACUUACACUGCACUUGCAGCUGGGAUUUGGCCAAAAUGUGCUGCUCCUGCUCC------UGCUUCUGUUG ..((((((.((((((((..(((...(((------......((((....((((((....)))).)).....)))).....)))..)))..)))))))------)..)))))).. ( -38.80) >DroSec_CAF1 61675 101 + 1 AUGCGAAAGAGGAGCAGUGGCAGGAGCA------GAAAUUGUCACUUACACUGCACUUGCAGCUGGGAUUUGGCCAAAAUGUGCUACUCCUGCUCC------UGCUCCUGUUG ......((.((((((((..(((((((.(------(..(((((((....((((((....)))).)).....))))...)))...)).)))))))..)------))))))).)). ( -42.70) >DroSim_CAF1 61843 107 + 1 AUGCGAAAGAGGAGCAGUGGCAGGAGCA------GAAAUUGUCACUUACACUGCACUUGCAGCUGGGAUUUGGCCAAAAUGUGCUGCUCCUGCUCCUGUUCCUGCUCCUUUUG ......(((((((((((..(((((((((------(.....(.(((...((((((....)))).))((......)).....)))).....))))))))))..))))))))))). ( -49.50) >DroEre_CAF1 61972 90 + 1 AUGGAAAA-AAAAGC--------------------AAAUUGUCACUUACACUGCACUUGCAGCUGGGAUUUGGCCAAAAC--CCAGCUCCAGCUCCAGCUCCAGCUCCUGUUG .((((...-....((--------------------(...(((.....))).)))..(((.(((((((.(((....))).)--)))))).))).))))....((((....)))) ( -22.40) >DroYak_CAF1 63576 113 + 1 AUAGGAAAAAGGAGCAGCAGCAGGAGCAGCAGUAGAAAUUGUCACUUACACUGCACUUGCAGCUGGGAUUUGGCCAAAAUGUGCUGCUCCUGCUCCUGCUUCAGCUCCUGUUU ((((((....(((((((.(((((((((((((.((......((((....((((((....)))).)).....)))).....))))))))))))))).)))))))...)))))).. ( -52.20) >consensus AUGCGAAAAAGGAGCAGUGGCAGGAGCA______GAAAUUGUCACUUACACUGCACUUGCAGCUGGGAUUUGGCCAAAAUGUGCUGCUCCUGCUCC_G_U_CUGCUCCUGUUG .........((((((((.((((((((((............((((....((((((....)))).)).....))))..........)))))))))).)......))))))).... (-22.85 = -26.01 + 3.16)
Location | 6,598,705 – 6,598,806 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 80.61 |
Mean single sequence MFE | -40.86 |
Consensus MFE | -22.46 |
Energy contribution | -24.86 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.12 |
Mean z-score | -4.15 |
Structure conservation index | 0.55 |
SVM decision value | 3.33 |
SVM RNA-class probability | 0.999021 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6598705 101 - 23771897 CAACAGAAGCA------GGAGCAGGAGCAGCACAUUUUGGCCAAAUCCCAGCUGCAAGUGCAGUGUAAGUGACAAUUUC------UGCUCAUGCCACUGCUCCUUUUCCGCAU ........((.------((((.((((((((.......((((.........(((((....)))))....((((((.....------)).)))))))))))))))).)))))).. ( -34.51) >DroSec_CAF1 61675 101 - 1 CAACAGGAGCA------GGAGCAGGAGUAGCACAUUUUGGCCAAAUCCCAGCUGCAAGUGCAGUGUAAGUGACAAUUUC------UGCUCCUGCCACUGCUCCUCUUUCGCAU ....(((((((------(..(((((((((((((....(((.......)))(((((....)))))....))).......)------)))))))))..))))))))......... ( -43.61) >DroSim_CAF1 61843 107 - 1 CAAAAGGAGCAGGAACAGGAGCAGGAGCAGCACAUUUUGGCCAAAUCCCAGCUGCAAGUGCAGUGUAAGUGACAAUUUC------UGCUCCUGCCACUGCUCCUCUUUCGCAU ....((((((((...((((((((((((..((((....(((.......)))(((((....)))))....))).)..))))------))))))))...))))))))......... ( -46.40) >DroEre_CAF1 61972 90 - 1 CAACAGGAGCUGGAGCUGGAGCUGGAGCUGG--GUUUUGGCCAAAUCCCAGCUGCAAGUGCAGUGUAAGUGACAAUUU--------------------GCUUUU-UUUUCCAU .....((((..(((((((..((((.((((((--(.(((....))).))))))).).))).))))((((((....))))--------------------)).)))-..)))).. ( -29.90) >DroYak_CAF1 63576 113 - 1 AAACAGGAGCUGAAGCAGGAGCAGGAGCAGCACAUUUUGGCCAAAUCCCAGCUGCAAGUGCAGUGUAAGUGACAAUUUCUACUGCUGCUCCUGCUGCUGCUCCUUUUUCCUAU ....(((((..(.(((((.(((((((((((((....(((..((.......(((((....))))).....)).))).......))))))))))))).))))).)...))))).. ( -49.90) >consensus CAACAGGAGCAG_A_C_GGAGCAGGAGCAGCACAUUUUGGCCAAAUCCCAGCUGCAAGUGCAGUGUAAGUGACAAUUUC______UGCUCCUGCCACUGCUCCUCUUUCGCAU ....(((((((......(..(((((((((........(((.......)))(((((....))))).....................)))))))))..))))))))......... (-22.46 = -24.86 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:08 2006