Locus 235

Sequence ID 3L_DroMel_CAF1
Location 640,445 – 640,546
Length 101
Max. P 0.979457
window349

overview

Window 9

Location 640,445 – 640,546
Length 101
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 72.94
Mean single sequence MFE -28.45
Consensus MFE -16.58
Energy contribution -18.33
Covariance contribution 1.75
Combinations/Pair 1.12
Mean z-score -2.10
Structure conservation index 0.58
SVM decision value 1.84
SVM RNA-class probability 0.979457
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 640445 101 - 23771897
----UUUGACUCCUGUCUUCGGUUACC------GAUUUCCUGCUCACCGCUGCUGCCGUGAGCAUACUCAAAACAUUCCUGGGCUCACGGGGCUUAGGUUUAUUUUCAAAC
----...(((....))).((((...))------)).....(((((((.((....)).))))))).....((((.(..((((((((.....))))))))..).))))..... ( -30.30)
>DroSec_CAF1 7742 101 - 1
----UUUGACUCCUGUCUUCGUUUACC------GAUUUCCUGCUCACCGCUGCUGCCGUGAGCAUACUGAACACAUUCCUGGGCUCCCGGGGCUUAGGUUUAUUUUCAAAC
----...(((....))).(((.....)------)).....(((((((.((....)).)))))))...((((......((((((((.....))))))))......))))... ( -30.30)
>DroSim_CAF1 10237 101 - 1
----UUUGACUCCUGUCUUCGGUUACC------GAUUUCCUGCUCACCGCUGCUGCCGUGAGCAUACUGAACACAUUCCUGGGCUCUCGGGGCUUAGGUUUAUUUUCAAAC
----...(((....))).((((...))------)).....(((((((.((....)).)))))))...((((......((((((((.....))))))))......))))... ( -32.50)
>DroEre_CAF1 10591 107 - 1
----UUUGACCCCUGUCUUCGUUCAGCUGGUCACGUUUCCUGGUCACCGCUGCUGCCGUGAGCAUACUCAUCACAUUCCUGGCCUCUCGGGGCUUAGGUUUAGCUUCAACC
----..(((((.(((........)))..))))).......((.((((.((....)).)))).)).............((((((((....)))).))))............. ( -27.80)
>DroYak_CAF1 7887 96 - 1
---------------UCUUCGUUCAGCUGGUCACGUUUCCUGCUCACCGCUGCUGCCGUGAGCAUACUCAUCACAUUCCUGGGCUCUCGGGGCUUAGGUUUAGCUUCAACC
---------------.....(((.((((((..........(((((((.((....)).))))))).............((((((((.....)))))))).))))))..))). ( -30.80)
>DroAna_CAF1 7377 98 - 1
UCAUUUCGCACUUUAUCCUCAUUUAAA------GAUUUCCGAC---CAGCGGCCGCUGUCAACAUGCUAAGUACGUUGGUCUUUUCCUUUGGCUUCACUUUAGUUUC----
.......((.(((((........))))------)......(((---(((((..(((((....)).))...)..))))))))..........))..............---- ( -19.00)
>consensus
____UUUGACUCCUGUCUUCGUUUACC______GAUUUCCUGCUCACCGCUGCUGCCGUGAGCAUACUCAACACAUUCCUGGGCUCUCGGGGCUUAGGUUUAGUUUCAAAC
........................................(((((((.((....)).))))))).............((((((((.....))))))))............. (-16.58 = -18.33 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:02 2006