Locus 2349

Sequence ID 3L_DroMel_CAF1
Location 6,594,262 – 6,594,362
Length 100
Max. P 0.534572
window3622

overview

Window 2

Location 6,594,262 – 6,594,362
Length 100
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 91.38
Mean single sequence MFE -36.78
Consensus MFE -28.32
Energy contribution -29.38
Covariance contribution 1.06
Combinations/Pair 1.03
Mean z-score -2.71
Structure conservation index 0.77
SVM decision value 0.00
SVM RNA-class probability 0.534572
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6594262 100 - 23771897
GUGCACUCAUGUUUCAUAUAUGAAAUAAUUAUAUGUGCGGUCAGCACAGUCGCUGCCAAAA-----------GGCCGCCGACUGGCUGCGGGCAGUGCAGCAUUUUCCUUG
.(((((...(((((((....)))))))......(((.((..((((.(((((((.(((....-----------))).).)))))))))))).))))))))............ ( -37.00)
>DroSec_CAF1 57641 100 - 1
GUGCACUCAUGUUUCAUAUAUGAAAUAAUUAUAUGUGCGGUCAGCACAGUCGCUGCCAAAA-----------GGCCGCCGACUGGCUGCGGGCAGUGCAGCAUUUUCCCUG
.(((((...(((((((....)))))))......(((.((..((((.(((((((.(((....-----------))).).)))))))))))).))))))))............ ( -37.00)
>DroSim_CAF1 57415 100 - 1
GUGCACUCAUGUUUCAUAUAUGAAAUAAUUAUAUGUGCGGUCAGCACAGUCGCUGCCAAAA-----------GGCCGCCGACUGGCUGCGGGCAGUGCAGCAUUUUCCCUG
.(((((...(((((((....)))))))......(((.((..((((.(((((((.(((....-----------))).).)))))))))))).))))))))............ ( -37.00)
>DroEre_CAF1 57800 100 - 1
GUGCACUCAUGUUUCAUAUAUGAAAUAAUUAUAUGUGCGGUCAGCACAGUCGCUGCCAAAA-----------GGCCGCCGACUGGCUGCGGGCAGUGCAGCAUUUUCCCUG
.(((((...(((((((....)))))))......(((.((..((((.(((((((.(((....-----------))).).)))))))))))).))))))))............ ( -37.00)
>DroYak_CAF1 59370 100 - 1
GUGCACUCAUGUUUCAUAUAUGAAAUAAUUAUAUGUGCGGUCAGCACAGUCGCUGGCAAAA-----------GGCCGCCGACUGGCUGCGGGCAGUGCAGCAUUUUCCCUG
.(((((...(((((((....)))))))......(((.((..((((.((((((.((((....-----------.)))).)))))))))))).))))))))............ ( -38.00)
>DroAna_CAF1 69683 109 - 1
AUG--CUCAUGUUUCAUAUAUGAAAUAAUUAUAUGUGCGGUCAGGACAGUGGCUCUAAAAAGAACCAAAAAUGGCCGGCGACUGGCUGCGGGCAGUGCAGCAGUCCCUCUA
..(--(........(((((((((.....)))))))))((((((......(((.(((....))).)))....))))))))(((((.(((((.....))))))))))...... ( -34.70)
>consensus
GUGCACUCAUGUUUCAUAUAUGAAAUAAUUAUAUGUGCGGUCAGCACAGUCGCUGCCAAAA___________GGCCGCCGACUGGCUGCGGGCAGUGCAGCAUUUUCCCUG
.(((((...(((((((....)))))))......(((.((..((((.(((((((.(((...............))).).)))))))))))).))))))))............ (-28.32 = -29.38 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:06 2006