Locus 2348

Sequence ID 3L_DroMel_CAF1
Location 6,593,682 – 6,593,775
Length 93
Max. P 0.976579
window3621

overview

Window 1

Location 6,593,682 – 6,593,775
Length 93
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 95.39
Mean single sequence MFE -16.08
Consensus MFE -13.52
Energy contribution -13.72
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.84
SVM decision value 1.77
SVM RNA-class probability 0.976579
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6593682 93 + 23771897
AAAUGCACUCACCCGAGUCCAAUUCCCAGCUCUAGCUCUAAGUAUU------CCUCCAACUCUCCAUCUCGUUGGCAUGUGCAUACAAAUGCCAUAUAA
.(((((((((....)))).........(((....)))....)))))------...(((((..........))))).(((.((((....))))))).... ( -15.30)
>DroSec_CAF1 57066 93 + 1
AAAUGCACUCACCCGAGUCUAAUUCCCAGCUCUAGGUCUAAGUAUU------CCUCCAACUCUCCAUCUCUUUGGCAUGUGCGUACAAAUGCCAUAUAA
.(((((....(((.((((..........))))..)))....)))))------....................((((((.((....)).))))))..... ( -14.30)
>DroSim_CAF1 56839 93 + 1
AAAUGCACUCACCCGAGUCCAAUUCCCAGCUCUAGCUCUAAGUAUU------CCUCCAACUCUCCAUCUCGUUGGCAUGUGCAUACAAAUGCCAUAUAA
.(((((((((....)))).........(((....)))....)))))------...(((((..........))))).(((.((((....))))))).... ( -15.30)
>DroEre_CAF1 57209 93 + 1
AAAUGCACUCACCCGAGUCCAAUUCCCAGCUCUAGCUCUAAGUAUU------CCGCCAACUCUCCAUCUCGUUGGCAUGUGCAUACAAAUGCCAUAUAA
.(((((((((....)))).........(((....)))....)))))------..((((((..........))))))(((.((((....))))))).... ( -20.20)
>DroYak_CAF1 58750 99 + 1
AAAUGCACUCACCCGAGUCCAAUUCCCAGCUCUAGCUCUAAGUAUUCCUAUUCCUCCAACUCUCCAUCUCGUUGGCAUGUGCAUACAAAUGCCAUAUAA
.(((((((((....)))).........(((....)))....))))).........(((((..........))))).(((.((((....))))))).... ( -15.30)
>consensus
AAAUGCACUCACCCGAGUCCAAUUCCCAGCUCUAGCUCUAAGUAUU______CCUCCAACUCUCCAUCUCGUUGGCAUGUGCAUACAAAUGCCAUAUAA
.(((((((((....)))).........(((....)))....)))))..........................((((((.((....)).))))))..... (-13.52 = -13.72 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:05 2006