Locus 2347

Sequence ID 3L_DroMel_CAF1
Location 6,591,684 – 6,591,798
Length 114
Max. P 0.930852
window3620

overview

Window 0

Location 6,591,684 – 6,591,798
Length 114
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 77.18
Mean single sequence MFE -38.03
Consensus MFE -26.71
Energy contribution -27.66
Covariance contribution 0.95
Combinations/Pair 1.25
Mean z-score -1.72
Structure conservation index 0.70
SVM decision value 1.21
SVM RNA-class probability 0.930852
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6591684 114 - 23771897
GCAUCCGGGCGUAUUCGGCACGCGGCUGGCGGAACUUCUCCAGCAGCUCCGCCUGCUGAUCGGUGAGGUUCUUUAGCUUUUUGCCUGCAAUGUAAAAAGAAAAA-AUAUUAGUAA--
((((.((((((.....(((.(((.....)))(((((((.((..((((.......))))...)).)))))))....)))...))))))..))))...........-..........-- ( -34.80)
>DroPse_CAF1 68033 108 - 1
GCAUGCGGGCGUAUUCGGCACGUGGCUGGCGGAACUUCUCCAUCAGCUCCGCCUGCUGGUCGGUGAGGUUCCUUAGCUUUUUGCCUGCAAUUGACAGAG------GUUUUAGUA---
...(((((((((.....))....((((((.((((((((.((((((((.......)))))).)).))))))))))))))....)))))))..........------.........--- ( -42.50)
>DroGri_CAF1 68469 106 - 1
GCAUGCGGGCGUAUUCGGCGCGUGGUGUGCGAAACUUCUCCAGCAGUUCCGUUUGCUGGUCCGUGAGGUUCUUUAGCUUUUUGCCUGCAUGAAAC-A-------CAUUUUAG-AC--
.((((((((((.....((((((.....)))(((.((((.(((((((......))))))).....)))))))....)))...))))))))))....-.-------........-..-- ( -37.00)
>DroWil_CAF1 80061 113 - 1
GCAUGCGGGCAUAUUCAGCUCGUGGCUGUCGGAACUUAUCCAGCAGCUCUGUUUGCUGAUCUGUCAGAUUUUUCAGCUUUUUGCCUGCAAUGAGAAAAGAGAAA--UUUACAUAA--
.((((((((((...(((((.((.((((((.(((.....))).)))))).))...))))).......((....)).......))))))).)))............--.........-- ( -34.20)
>DroAna_CAF1 66950 115 - 1
GCAUCCUGGCGUACUCCGCCCGGGGCUGGCGGAACUUCUCCAGCAGUUCCGUCUGUUGAUCGGUGAGGUUCUUAAGCUUUUUGCCUGCAAG-AAUAGAACUCAA-UUAAUUAUAUCC
((.(((.((((.....)))).))))).(((((((((.(....).)))))))))...((((..((..((((((.....((((((....))))-)).))))))..)-)..))))..... ( -37.20)
>DroPer_CAF1 88395 108 - 1
GCAUGCGGGCGUAUUCGGCACGUGGCUGGCGGAACUUCUCCAUCAGCUCCGCCUGCUGGUCGGUGAGGUUCCUUAGCUUUUUGCCUGCAAUUGACAGAG------GUUUUAGUA---
...(((((((((.....))....((((((.((((((((.((((((((.......)))))).)).))))))))))))))....)))))))..........------.........--- ( -42.50)
>consensus
GCAUGCGGGCGUAUUCGGCACGUGGCUGGCGGAACUUCUCCAGCAGCUCCGCCUGCUGAUCGGUGAGGUUCUUUAGCUUUUUGCCUGCAAUGAACAAAG______AUUUUAGUA___
...((((((((............((((((.((((((((.((..((((.......))))...)).))))))))))))))...))))))))............................ (-26.71 = -27.66 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:04 2006