Locus 2346

Sequence ID 3L_DroMel_CAF1
Location 6,590,594 – 6,590,703
Length 109
Max. P 0.517928
window3619

overview

Window 9

Location 6,590,594 – 6,590,703
Length 109
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 77.44
Mean single sequence MFE -28.14
Consensus MFE -18.01
Energy contribution -18.35
Covariance contribution 0.34
Combinations/Pair 1.12
Mean z-score -1.22
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.517928
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6590594 109 + 23771897
--CUGUCGUUCAC---UAUUCCAGAUAAUCUACUGCAUUCGCGAACUUGAUCUCAGAAUCUCGAGCGCCACGGCACUGGACAUCUUCAAAGCGCUGUGGUUCUACCAGGGCAUC
--.((((((((..---.((((.((((.......(((....)))......))))..))))...))))((((((((.((............)).))))))))........)))).. ( -26.42)
>DroPse_CAF1 67322 109 + 1
--AAGGCUCUCUU---AAUUUCAGAUCAUAUACUGCAUUCGGGAGCUUGAUCUCAGAAUUUCCAGUGCCACCGCAUUGGAUAUAUUCAAGGCGCUGUGGUUCUACCAGGGCAUA
--.((((((((..---.....(((........))).....)))))))).......((((.((((((((....))))))))...)))).....(((.(((.....))).)))... ( -34.50)
>DroGri_CAF1 67754 112 + 1
-UUUUUCCC-UAUCAUUCGUACAGAUAAUUUAUUGUAUUCGUGAACUUGAUCUCAGCAUUUCGAGUGCGACCGCAUUGGACAUAUUCAAGGCGCUGUGGUUCUACCAGGGCAUU
-.....(((-(.........((((........(((((((((.....(((....))).....))))))))).(((.(((((....))))).)))))))((.....)))))).... ( -25.60)
>DroWil_CAF1 78623 105 + 1
--CAAUGGGC-UC------CACAGAUCAUCUACUGCAUCCGCGAACUUGAUCUCAGCAUCUCGAGUGCCACAGCCCUGGACAUAUUUAAGGCUCUAUGGUUCUACCAGGGCAUC
--...(((((-((------...((((((.....(((....)))....)))))).........)))).)))..(((((((.......((..(((....)))..)))))))))... ( -26.01)
>DroMoj_CAF1 56633 107 + 1
UUUUAUGGC-------CCACACAGAUAAUUUACUGCAUUCGUGAACUUGAUCUCAGCAUUUCGAGUGCAACUGCCCUGGAUAUAUACAAGGCGCUCUGGUUCUACCAGGGCAUU
.........-------.................((((((((.....(((....))).....))))))))...(((.((........)).)))(((((((.....)))))))... ( -30.50)
>DroAna_CAF1 65872 107 + 1
--AAACC--UUAA---AAUUCCAGAUAAUAUACUGCAUUCGCGAACUUGAUCUCAGCAUUUCGAGUGCCACUGCCCUGGACAUCUUCAAGGCGCUGUGGUUCUACCAGGGCAUU
--.....--....---..................(((((((.((..(((....)))..)).)))))))....(((.((((....)))).)))(((.(((.....))).)))... ( -25.80)
>consensus
__AAAUCGCU_AC___AAUUACAGAUAAUAUACUGCAUUCGCGAACUUGAUCUCAGCAUUUCGAGUGCCACCGCACUGGACAUAUUCAAGGCGCUGUGGUUCUACCAGGGCAUU
..................................(((((((.((..(((....)))..)).)))))))....((..((((....))))..))(((.(((.....))).)))... (-18.01 = -18.35 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:03 2006