| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,588,277 – 6,588,368 |
| Length | 91 |
| Max. P | 0.863660 |
| Location | 6,588,277 – 6,588,368 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 86.55 |
| Mean single sequence MFE | -20.86 |
| Consensus MFE | -16.10 |
| Energy contribution | -17.50 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6588277 91 - 23771897 CAAACAA---AAUUAAUUGUGGCACAGUGAGAUUGCGAGCAAAUUCGCGCCGGUCGAGCAAAACAUUAAAAAAGAAUG------UACGGAGGUAUGUAUA ...((((---......)))).(((..(((((.(((....))).)))))(((..(((.(((................))------).))).))).)))... ( -14.19) >DroSec_CAF1 51065 90 - 1 CAAACAAUGCAAGCAAAUGUGGCACAGUGAGAUUGCGAGCAAAUUCGCGCCGGUGCCGCAAAACAUUAAAAAAGAGUG------UACGGAGGU----AUA ......((((.......((((((((.(((((.(((....))).)))))....))))))))..(((((.......))))------)......))----)). ( -25.20) >DroSim_CAF1 51446 87 - 1 CAAACAA---AAUUAAUUGUGGCACAGUGAGAUUGCGAGCAAAUUCGCGCCGGUGCCGCAAAACAUUAAAAAAGAGUG------UACGGAGGU----AUA .......---......(((((((((.(((((.(((....))).)))))....)))))))))...............((------(((....))----))) ( -24.00) >DroEre_CAF1 51828 86 - 1 CAAACAA---AAUUAAUUGUGGCAAAGUGAGAUUGCGAGCAAAUUCGCGACGGUGCCGCAAAACAUUAAAAA-GGGUG------UAUGGAGAA----AUA .......---......((((((((..(((((.(((....))).))))).....)))))))).(((((.....-.))))------)........----... ( -21.00) >DroYak_CAF1 53093 93 - 1 CAAACAA---AGUUAAUUGAGGCAAAGUGAGAUUGCGAGCAAAUUCGCGCCGGUGCCGCAAAACAUUAAAAAAGAGUGUACUCGUAUGGAGAA----AUA ((.((..---.(((..(((.((((..(((((.(((....))).))))).....)))).)))))).........(((....))))).)).....----... ( -19.90) >consensus CAAACAA___AAUUAAUUGUGGCACAGUGAGAUUGCGAGCAAAUUCGCGCCGGUGCCGCAAAACAUUAAAAAAGAGUG______UACGGAGGU____AUA ................(((((((((.(((((.(((....))).)))))....)))))))))....................................... (-16.10 = -17.50 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:02 2006