Locus 2343

Sequence ID 3L_DroMel_CAF1
Location 6,578,746 – 6,578,866
Length 120
Max. P 0.648975
window3616

overview

Window 6

Location 6,578,746 – 6,578,866
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.17
Mean single sequence MFE -47.23
Consensus MFE -36.62
Energy contribution -37.82
Covariance contribution 1.20
Combinations/Pair 1.18
Mean z-score -2.30
Structure conservation index 0.78
SVM decision value 0.24
SVM RNA-class probability 0.648975
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6578746 120 + 23771897
CGCCAAAACUGCAAUUGCGCAAUGCCACCUGCAAGUGCUUCUUGGGCAUGAAACGUGCCCUGGCACGAAGCAACUGAAGACGCAUUCCGGGAUACAAAACGGUGGCCAGGCGGUACAGAA
((((.....(((......)))..(((((((((..(((((....(((((((...))))))).)))))...))).(((((......)).)))..........))))))..))))........ ( -43.30)
>DroSec_CAF1 41451 119 + 1
CGCCGAAACUGCAAUUGCGCAGUGCCACCUGCAAGUGCUUCUUGGGCAUGAAACGUGCCCUGGCACGUAGCA-CUGCAGACGCAUUCCGGGAUACAAAACGGUGGCCAGGCGGUACAGAA
((((...(((((......)))))(((((((((..(((((....(((((((...))))))).)))))...)))-.(((....)))................))))))..))))........ ( -48.50)
>DroSim_CAF1 41609 120 + 1
CGCCGAAACUGCAAUUGCGCAGUGCCACCUGCAAGUGCUUCUUGGGCAUGAAACGUGCCCUGGCACGAAGCAACUGCAGACGCAUUCCGGGAUACAAAACGGUGGCCAGGCGGUACAGAA
((((....(((((.((((((((......))))..(((((....(((((((...))))))).)))))...)))).)))))..((...(((..........)))..))..))))........ ( -50.10)
>DroEre_CAF1 41851 120 + 1
CGCCAAAACUGCAAUUGCGCAGUGCCACCUGUAAGUGCGCCUUGGGCAUGAAACGCGCCCUGGCACGAAGCAACUGCAGGCGCAUUCCCGGAUACAAAAUGGUGGCCAGGCGGUACAGGA
((((...(((((......)))))((((((.(..(((((((((.((((.........)))).........((....)))))))))))..)(....).....))))))..))))........ ( -47.70)
>DroYak_CAF1 42757 120 + 1
CGCCAAAACUGCAAUUGCGCAGUGCCACCUGCAGAUGCGUCUUGGGCAUGAAACGUGCCCUGGCUCGCAGCAACUGCAGGCGCAUGCCGGGAUACAAAACGGUGGCCAGGCGGUACAUGA
((((...(((((......)))))(((((((((((.((((.((.(((((((...))))))).))..))))....)))))(((....)))............))))))..))))........ ( -54.20)
>DroAna_CAF1 52589 120 + 1
CGCCAAUGCUGCAGUUGCGCAAUGUUUCCUCCAGUCGGGAUUUGGGCAUGAAGCGACCCCUGGCUCGCAUCAAAUGAAAGCGAAUCCCCGGAUGCAGCACGGUGGCUAGGCGGUAGAUAA
.((((.((((((((((((...((((((..(((.....)))...))))))...)))))..((((.((((.((....))..))))....)))).)))))))...)))).............. ( -39.60)
>consensus
CGCCAAAACUGCAAUUGCGCAGUGCCACCUGCAAGUGCGUCUUGGGCAUGAAACGUGCCCUGGCACGAAGCAACUGCAGACGCAUUCCGGGAUACAAAACGGUGGCCAGGCGGUACAGAA
((((....(((((.((((...((((((...((....)).....(((((((...)))))))))))))...)))).)))))..........((.(((......))).)).))))........ (-36.62 = -37.82 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:00 2006