Locus 2342

Sequence ID 3L_DroMel_CAF1
Location 6,575,183 – 6,575,292
Length 109
Max. P 0.552663
window3615

overview

Window 5

Location 6,575,183 – 6,575,292
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 90.46
Mean single sequence MFE -34.30
Consensus MFE -23.60
Energy contribution -24.04
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -2.24
Structure conservation index 0.69
SVM decision value 0.04
SVM RNA-class probability 0.552663
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6575183 109 + 23771897
UAGUUUCCUGCGGCUCUACCACUUCCCUUCCGUCAAUAAUCCAAUCAAAAGUUAUUUUCGGCAGCUCUGUGGUGACAAUGAUGGUUUCCGAAGUGGCUCCUGUCGUCGU
.........(((((....(((((((....((((((.........................(((....)))(....)..)))))).....))))))).....)))))... ( -26.20)
>DroSec_CAF1 37851 109 + 1
UUGUUUCCUGCGGCUCUACCACUUCCCUGCCGUCAAUAAUCCAAUCGAAAGUUAUUUUCGGCAGCUCUGUGGUGACAAUGAUGGUUUCCAAAGUUGGAACUGUCGUCGU
.........(((((..((((((....((((((..((((((..........))))))..))))))....)))))).....(((((((.(((....))))))))))))))) ( -35.70)
>DroSim_CAF1 38006 109 + 1
UUGUUUCCUGCGGCUCUACCACUUCCCUGCCGUCAAUAAUCCAAUCGAAAGUUAUUUUCGGCAGCUCUGUGGUGACAAUGAUGGUUUCCAAAGUUGGAACUGUCGUCGU
.........(((((..((((((....((((((..((((((..........))))))..))))))....)))))).....(((((((.(((....))))))))))))))) ( -35.70)
>DroEre_CAF1 38302 109 + 1
UGGUGUCCUGCGGCUCUACCACUUCCCUGCCGUCAAUAAUCCAAUCGAAAGUUAUUUUCGGCAGCUCUGUGGUGACAAUGGUGGUUUCGAGAGUACCACCUGUCGUAGU
.......(((((((..((((((....((((((..((((((..........))))))..))))))....)))))).....((((((..(....).)))))).))))))). ( -41.50)
>DroYak_CAF1 39195 109 + 1
UGGUGUCCUGCGGCUCUACCACUUCCCUGCCGUCAAUUAUCCAAUCGAAUGUUAUUUUCGGCAACUCUGUGGUGACAAUGGUGGUUUCGAGUGUACCACUUGUCGCAGU
.......(((((((..((((((.....(((((..(((....((......))..)))..))))).....)))))).....((((((.........)))))).))))))). ( -32.40)
>consensus
UGGUUUCCUGCGGCUCUACCACUUCCCUGCCGUCAAUAAUCCAAUCGAAAGUUAUUUUCGGCAGCUCUGUGGUGACAAUGAUGGUUUCCAAAGUAGCACCUGUCGUCGU
.........(((((..((((((....((((((..((((((..........))))))..))))))....)))))).....((..(...............)..))))))) (-23.60 = -24.04 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:59 2006