| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,574,347 – 6,574,452 |
| Length | 105 |
| Max. P | 0.840377 |
| Location | 6,574,347 – 6,574,452 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.27 |
| Mean single sequence MFE | -41.32 |
| Consensus MFE | -28.66 |
| Energy contribution | -29.13 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.840377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6574347 105 + 23771897 GAGGCCUUCAUUGUUUCACCGGACACUGGAAAUCCGCCAGGAGCUCGACUGGUAAACUGUACACUGGGUGAAGCCGUGAAGGUUUCACCCUUCUCCUUCGUC---UCA (((((((((((.((((((((.......((....))(((((........))))).............)))))))).)))))))))))................---... ( -38.70) >DroPse_CAF1 50228 108 + 1 GAGGCCUUCAUCGUCUCUCCGGAGACAGGGAAUCCGCCGGGCGCCCGGCUGGUAAACUGCACACUGGGCGAGGCCGUGAAGGUUUCUCCUUUCAGCUUGGUCUGUUCA (((((((((((.((((((((((.(.(((...(((.(((((....))))).)))...)))..).))))).))))).)))))))))))...................... ( -45.70) >DroGri_CAF1 50113 102 + 1 GAGGCUUUCAUUGUCUCGCCGGAGACGGGAAAGCCGCCAGGUGCGCGGCUGGUAAACUGUACGCUUGGCGACGCCGUGAAUGUGUC---CGACUCCGUCGAG---GCA ..(((((((.(((((((....))))))))))))))((((((((..(((........)))..))))))))(((((.......)))))---((((...))))..---... ( -45.70) >DroYak_CAF1 38353 105 + 1 GAGGCCUUCAUUGUUUCACCGGACACUGGAAAUCCGCCAGGAGCUCGACUCGUAAACUGUACACUGGGUGAGGCCGUGAAGGUUUCACCCUUCUCCUUAGUC---UCG (((((((((((.((((((((.......((....))..((((((.....)))(((.....))).))))))))))).)))))))))))................---... ( -35.90) >DroAna_CAF1 47983 105 + 1 GAAGCCUUCAUCGUCUCUCCGGACACUGGAAAGCCACCUGGAGCUCGACUAGUAAACUGCACACUUGGCGAGGCAGUGAAUGUUUCGCCUUUCUCCUUGGCU---UCG ((((((....(((...((((((....(((....))).))))))..)))..................(((((((((.....))))))))).........))))---)). ( -36.20) >DroPer_CAF1 70792 108 + 1 GAGGCCUUCAUCGUCUCUCCGGAGACAGGGAAUCCGCCGGGCGCCCGGCUGGUAAACUGCACACUGGGCGAGGCCGUGAAGGUUUCUCCUUUCUGCUUGGUCUGUUCU (((((((((((.((((((((((.(.(((...(((.(((((....))))).)))...)))..).))))).))))).)))))))))))...................... ( -45.70) >consensus GAGGCCUUCAUCGUCUCUCCGGACACUGGAAAUCCGCCAGGAGCUCGACUGGUAAACUGCACACUGGGCGAGGCCGUGAAGGUUUCACCCUUCUCCUUGGUC___UCA (((((((((((.(((((.((.......((....))(((((........))))).............)).))))).)))))))))))...................... (-28.66 = -29.13 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:58 2006