Locus 2340

Sequence ID 3L_DroMel_CAF1
Location 6,574,168 – 6,574,273
Length 105
Max. P 0.500000
window3613

overview

Window 3

Location 6,574,168 – 6,574,273
Length 105
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 78.88
Mean single sequence MFE -41.25
Consensus MFE -27.17
Energy contribution -28.70
Covariance contribution 1.53
Combinations/Pair 1.42
Mean z-score -1.19
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6574168 105 - 23771897
UCCGUAUGCCCAUGUGGUCGAAUACGCCCACAUUUAUGGGCAUGCAGGGUGCGCACUUUGGAGGAUCAUCGAACCCUGGCG------CAGGCAUAUUUUUUGUGCCUCAGC
(((((((((((((((((.((....)).)))))....))))))))).)))(((((...((.((......)).)).....)))------))((((((.....))))))..... ( -41.90)
>DroVir_CAF1 50773 102 - 1
UCCGCAUGCCGAUGUGGUCGCCCACGCCUUCGUUUAUGGGCAUGCAGGGCGCCCACUUUGGUGGCUCGUCCAAUGCCGG---------CGGCAUAUUCUUUGUACCGCAGC
...((..(((((.((((.(((((..((((........)))).....))))).)))).)))))(((.........))).(---------(((.(((.....))).)))).)) ( -39.90)
>DroGri_CAF1 49937 102 - 1
UCCGCAUGCCCAUGUGGUCGCCGACGCCCACGUUUAUGGGCAUGCAGGCCGGACACUUUGGUGGCUCCUCGAAUGCUGG---------CGGCAUCUUCUUUGUGCCGCAAC
...((((((((((((((.((....)).))))....))))))))))..(((((.((.(((((.(....))))))))))))---------)(((((.......)))))..... ( -42.80)
>DroMoj_CAF1 38210 102 - 1
UCCGCAUGCCCAUGUGGUCGGCCACGCCCUCGUUUAUGGGCAUGCAGGGCGCCCAGUUUGGCGGCUCAUCGAAUGCCGG---------UGGCAUCUUCUUUGUGCCGCAGC
...(((((((((((.((.((....)).)).....))))))))))).((....))......(((((.((..(((((((..---------.)))))..))..)).)))))... ( -44.60)
>DroAna_CAF1 47804 105 - 1
UCCGGAUGCCUAUGUGGUCUGGCUCUCCCGCUUUUAUGGGAAUGCAGGGCGCCCACUUUGGAGGAUCCUCGAACGCCGGCG------GCGGUAUUUUCUUUGUUCCCCAGC
...((..(((......((((.((..(((((......)))))..)).))))(((..(.((.(((....))).)).)..))))------))((.((.......)).))))... ( -31.20)
>DroPer_CAF1 70607 111 - 1
UCCGGAUGCCCAUGUGGUCGGCCGCGCCCACGUUUAUGGGCAUGCAGGGGGCACACUUCGGUGGUCCAUCCAACAAUGGCGGAGGAGGCGGAGUCUUCUUUGUGCCGCAGC
...((((((((..((((....))))(((((......))))).....)))(((.(((....)))))))))))......((((((((((((...))))))))..))))..... ( -47.10)
>consensus
UCCGCAUGCCCAUGUGGUCGGCCACGCCCACGUUUAUGGGCAUGCAGGGCGCCCACUUUGGUGGCUCAUCGAACGCCGG_________CGGCAUCUUCUUUGUGCCGCAGC
.((((((((((((((((.((....)).))))....)))))))))).))............(((((.((....((((((..........))))))......)).)))))... (-27.17 = -28.70 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:57 2006