Locus 2339

Sequence ID 3L_DroMel_CAF1
Location 6,570,639 – 6,570,734
Length 95
Max. P 0.872705
window3612

overview

Window 2

Location 6,570,639 – 6,570,734
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 77.00
Mean single sequence MFE -26.13
Consensus MFE -16.58
Energy contribution -16.22
Covariance contribution -0.36
Combinations/Pair 1.30
Mean z-score -1.71
Structure conservation index 0.63
SVM decision value 0.88
SVM RNA-class probability 0.872705
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6570639 95 + 23771897
AAGAUUCCGGUACUGCUGAACUUUGGCUGCUGAUGCACAUCAAAGUGCACAUCGUGGCCAUUGGUCAAAGCAACUAAAAAGUAAAUUCAAGCCAA
........(((..((((..(((.((((..(((.(((((......)))))))..)..))))..)))...))))(((....)))........))).. ( -26.70)
>DroGri_CAF1 46197 88 + 1
AAGAUGCCAACACUGCUGAACUUGGGUUGCUGAUGCGCAUCAAAGUGCACAUCGUGUCCAUUGGUCAAGGCAACUACAAA------GAG-AGCGG
............(((((...(((.(((((((((((.((((....)))).)))).((.((...)).)).)))))))...))------)..-))))) ( -26.40)
>DroSec_CAF1 33302 95 + 1
AAUAUUCCGCUACUGCUGAACUUGGGCUGCUGAUGCACAUCAAAGUGCACAUCGUGGCCAUUGGUCAAAGCAACUGAAAAGGAUAUUCAAGUUAC
.....(((.(...((((..(((..(((..(((.(((((......)))))))..)..)))...)))...))))...)....)))............ ( -25.20)
>DroWil_CAF1 44485 95 + 1
AAGAUUCCUACAUUGCUGAAUUUGGGCUGCUGGUGUGCAUUAUAGUGAACAUCAUGGCCAUUGGUCAGAGCAACUGCAAAGCAAAUACAAGGGAA
....(((((...(((((((.....(((((.((((((.(((....))).))))))))))).....))...((....))..))))).....))))). ( -25.90)
>DroYak_CAF1 34672 94 + 1
AAGAUUCCCGUGCUGCUGAACUUGGGCUGCUGGUGCACGUCGAAGUGCACAUCGUGGCCAUUGGUCAAAGCAACUGAAAAGGAUAUUCA-ACCUA
....(((...((((..(((.((..(((..(..((((((......))))))...)..)))...))))).))))...))).(((.......-.))). ( -31.70)
>DroAna_CAF1 44355 94 + 1
AAGAUUCCGACACUGCUGAACUUGGGCUGUUGGUGAACAUGGAAAUGCACAUCAUGUCCAUUGGUUAGGGCAACUAAAAACGAAUAUAA-AUGUA
.............((((.(((((((((...(((((..(((....)))..))))).)))))..))))..)))).................-..... ( -20.90)
>consensus
AAGAUUCCGACACUGCUGAACUUGGGCUGCUGAUGCACAUCAAAGUGCACAUCGUGGCCAUUGGUCAAAGCAACUAAAAAGGAAAUUCA_ACCAA
.............((((..(((..((((((.((((..(((....)))..))))))))))...)))...))))....................... (-16.58 = -16.22 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:56 2006