Locus 2338

Sequence ID 3L_DroMel_CAF1
Location 6,568,614 – 6,568,710
Length 96
Max. P 0.928093
window3611

overview

Window 1

Location 6,568,614 – 6,568,710
Length 96
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 64.57
Mean single sequence MFE -24.00
Consensus MFE -9.22
Energy contribution -9.30
Covariance contribution 0.08
Combinations/Pair 1.25
Mean z-score -2.06
Structure conservation index 0.38
SVM decision value 1.19
SVM RNA-class probability 0.928093
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6568614 96 - 23771897
GUGUAACUGCACAGCGGAUCACUUCCAGUGCAGUUCGUAAGUGG--CUAAUAAAGACUUAAAUCUAGUCGCAGUUCC-AUUCAAUUAU-A--UAUU----UAAAAC
..(.((((((((...(((.....))).)))))))))....((((--(((...............)))))))......-..........-.--....----...... ( -20.56)
>DroVir_CAF1 45131 90 - 1
GUGCAACUGUACCGCGGAUCACUUUCAAUGCAGCUCGUAAGUCA-AC-UACAAACA--GCACU----UGGGGGCUCGCCUUUGACUCAUU-UUAUC----U---UU
(((...(((.....)))..)))..((((.(((((((.(((((..-.(-(......)--).)))----)).))))).))..))))......-.....----.---.. ( -18.40)
>DroPse_CAF1 44599 96 - 1
GUGCAAUUGCACUUCAGAUCAUUUCCAGUGCAGUUCGUGAGUUA-AACGAUUAA--UUGUAUUGUAUUGGAAGCUCAGAUUUAAGUGACUGGUAUU----C---UU
((((.....(((((.(((((.(((((((((((((((((......-.))))....--....)))))))))))))....))))))))))....)))).----.---.. ( -25.70)
>DroSec_CAF1 31277 96 - 1
GUGUAACUGCACAGCGGAUCACUUCCAGUGCAGUUCGUAAGUGA--CUAGUAAUGUUUUAAAUCUAGUCGCAGUUCC-AUUCAAUUAU-U--UAUU----CCAAAC
..(.((((((((...(((.....))).)))))))))....((((--((((.............))))))))......-..........-.--....----...... ( -24.42)
>DroEre_CAF1 31716 101 - 1
CUGUAACUGCACAGCGGAUCACUUUCAGUGCAGUUCGUAAGUGUUAUUGAUG-AAACUUCAAUGUUGUCGCAGUUGC-AUUACAUUAU-U--UAUUCUCCUCCUCC
.(((((((((((((((......(((((...((((.(....)....)))).))-)))......)))))).))))))))-).........-.--.............. ( -25.80)
>DroPer_CAF1 65155 96 - 1
GUGCAAUUGCACUUCAGAUCAUUUCCAGUGCAGUUCGUGAGUUA-AACGAUUAA--UUUUAUUGUAUUGGAAGCUCAGAUUUAAGUGACUGGUACU----C---UU
((((.....(((((.(((((.(((((((((((((....((((((-(....))))--))).)))))))))))))....))))))))))....)))).----.---.. ( -29.10)
>consensus
GUGCAACUGCACAGCGGAUCACUUCCAGUGCAGUUCGUAAGUGA_ACUGAUAAA_AUUUAAAUGUAGUCGCAGCUCC_AUUUAAUUAA_U__UAUU____C___UC
..(.((((((((...(((.....))).)))))))))...................................................................... ( -9.22 =  -9.30 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:55 2006