Locus 2336

Sequence ID 3L_DroMel_CAF1
Location 6,567,514 – 6,567,605
Length 91
Max. P 0.676552
window3609

overview

Window 9

Location 6,567,514 – 6,567,605
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 88.50
Mean single sequence MFE -15.02
Consensus MFE -12.96
Energy contribution -12.52
Covariance contribution -0.44
Combinations/Pair 1.36
Mean z-score -1.63
Structure conservation index 0.86
SVM decision value 0.30
SVM RNA-class probability 0.676552
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6567514 91 + 23771897
AUGCGCCAGAGAGCUUAACUUAUUUCCAAAAUAUAUCUUAACUGCUCUCAAUAGGUGCCAUUACUUAUAAUUCUCAAGUACCUUCUUUCAU
..(((((.((((((((((..(((.........)))..))))..))))))....)))))...(((((.........)))))........... ( -16.30)
>DroSec_CAF1 30173 91 + 1
AUGCGCCAGAGAGCUUAACUUAUUUCCAAAAUGUUUCUUAACUGCUCUCAAUAGGUGCCAUUACUUAUAAUUCUCAAGUACCUUCUUUCAU
..(((((.((((((.............................))))))....)))))...(((((.........)))))........... ( -15.45)
>DroSim_CAF1 30317 91 + 1
AUGCGCCAGAGAGCUUAACUUAUUUCCAAAAUGUUUCUUAACUGCUCUCAAUAGGUGCCAUUACUUAUAAUUCUCAAGUACCUUCUUUCAU
..(((((.((((((.............................))))))....)))))...(((((.........)))))........... ( -15.45)
>DroEre_CAF1 30636 91 + 1
AUGCGCCAGAGAGCUUAACUUAUUUCCAAAAUGUUUCUUAACUGCUCUUUAGAGGUGCGAUUACUUAUAAUUCUCAAGUACCUUCUUUCAU
.(((((((((((((.............................)))))))...))))))..(((((.........)))))........... ( -15.75)
>DroYak_CAF1 31547 91 + 1
AUGCGCCAGAGAGCCUAACUUAUUUCCAAAAUAUUUCUUAACUGCUCUUAAGAGGUGCGAUUACUUAUAAUUCUCAAGUACCUUCUUUCAU
.((((((.((((((.............................))))))....))))))..(((((.........)))))........... ( -13.65)
>DroAna_CAF1 41243 87 + 1
AUGCGCCCGAGAGACAACCUAAUUUCAAAAAUGUU---UGACGUUCCUCGAUGGCCGCAAGU-CUUCUAAUUCUCAAGUACCUUCUUUCAU
.((((((((((..((.........(((((....))---))).))..))))..)).))))...-............................ ( -13.50)
>consensus
AUGCGCCAGAGAGCUUAACUUAUUUCCAAAAUGUUUCUUAACUGCUCUCAAUAGGUGCCAUUACUUAUAAUUCUCAAGUACCUUCUUUCAU
..(((((.((((((.............................))))))....)))))................................. (-12.96 = -12.52 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:53 2006