Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,564,898 – 6,564,996 |
Length | 98 |
Max. P | 0.771130 |
Location | 6,564,898 – 6,564,996 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 76.99 |
Mean single sequence MFE | -23.45 |
Consensus MFE | -13.43 |
Energy contribution | -13.02 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.40 |
Mean z-score | -1.76 |
Structure conservation index | 0.57 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771130 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6564898 98 + 23771897 UUGGAGUCCAUGGACAAAGUGGGCGAUGUUCGUAAGGUUAUUGCUCAGGUGAAGUAUAAC---UUAAUAAAUUUCAUAGUACCUUUACUAAUAUCUAAAAA ((((((((....)))(((((((((((((..(....)..))))))))).(((((((.((..---....)).))))))).....)))).......)))))... ( -24.00) >DroSec_CAF1 27575 98 + 1 UUGGAGUCUAUGGACAAAGUGGGUGAUGUUCGCAAGGUUAUUGCUCAGGUGAAGUAUAAC---UUGAUAAAUUUUAUAGAACCUUUCCUAAUAUCAAAAAC ..((((((((((((.....((((..(((..(....)..)))..)))).((.(((.....)---)).))....))))))))....))))............. ( -21.60) >DroSim_CAF1 27703 98 + 1 UUGGAGUCUAUGGACAAAGUGGGUGAUGUUCGCAAGGUUAUUGCUCAGGUGAAGUAUAAC---UUAAUAAAUUGUAUAGUACCUUUACUAAUAUCCAAAAA ((((((((....)))..((((((..(((..(....)..)))..)))(((((..((((((.---........))))))..)))))..)))....)))))... ( -25.80) >DroEre_CAF1 27956 97 + 1 UUGGAAUCAAUGGACAAAGUGGGUGAUGUCCGCAAGGUUAUUGCUCAGGUGAGGUAUAAC---UCAAUACACUUUAUAGAAUUUUAAUUAAUAUAUACU-U ((((((((.(((((.....((((..(((.((....)).)))..))))(.((((......)---)))...)..))))).).)))))))............-. ( -21.00) >DroWil_CAF1 36258 97 + 1 UUAGAAGCAAUGGACAAGGUGGGCGAUGUGCGAAAGGUUAUAGCUCAGGUGAGUUUCCCACUG--AUGUCAAUUGACUGAACAUUAAG-AACAAGUCCA-A ..........(((((..((((((.......(....).....(((((....))))).))))))(--((((((......)).)))))...-.....)))))-. ( -24.90) >DroYak_CAF1 28856 97 + 1 UUGGAAUCAAUGGACAAAGUGGGUGAUGUCCGCAAGGUUAUUGCUCAGGUGAAGUAUAGC---UUUGUACACUUUAUUGAAUUUUAACUAAUGUGUACA-A ((((((((((((((.....((((..(((.((....)).)))..)))).(..(((.....)---))..)....))))))).)))))))............-. ( -23.40) >consensus UUGGAAUCAAUGGACAAAGUGGGUGAUGUUCGCAAGGUUAUUGCUCAGGUGAAGUAUAAC___UUAAUAAAUUUUAUAGAACCUUAACUAAUAUCUAAA_A ...................(((((((((.((....)).))))))))).(((((((.((.........)).)))))))........................ (-13.43 = -13.02 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:52 2006