Locus 2330

Sequence ID 3L_DroMel_CAF1
Location 6,540,513 – 6,540,617
Length 104
Max. P 0.605892
window3598

overview

Window 8

Location 6,540,513 – 6,540,617
Length 104
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 83.27
Mean single sequence MFE -35.03
Consensus MFE -20.74
Energy contribution -21.72
Covariance contribution 0.97
Combinations/Pair 1.21
Mean z-score -2.64
Structure conservation index 0.59
SVM decision value 0.15
SVM RNA-class probability 0.605892
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6540513 104 - 23771897
AAGUGGAUGCAGUCCGAUGCUAUUGGAACAAACUUGCGGGCAAUGAACCAGAAACAUUA------AAAACAGAGCAGCCGGCAAAGGAAACCCAGCCAGGCAUUCACUUC
((((((((((..((((((...))))))..........((........))..........------........)).((((((...(....)...))).))))))))))). ( -26.70)
>DroPse_CAF1 14951 110 - 1
AAGUGGAUGCCGUGCGCUGCUAUUGGCAGAAGCUGGCGGGCAAUGAACCAGAAACGCCACCCGCAGACACGGAGAAGGGGGAUGAGGAAGGCCGCACGGGUCUCCACUUC
(((((((.((((((((((((.....))))..(((((((................)))).(((.(............).)))........)))))))).))).))))))). ( -39.89)
>DroSec_CAF1 3088 104 - 1
AAGUGGAUGCAGUCCGAUGCUAUUGGAACAAACUGGCGGGCAAUGAACCGGAAACACUA------AAAACAGAGCAGCCGGCAAAGGAAACCCAGCCAGGCAUUCACUUC
((((((((((..((((((...)))))).....((((((((.......((((...(.((.------.....)).)...)))).........))).))))))))))))))). ( -35.79)
>DroEre_CAF1 3169 104 - 1
AAGUGGAUGCAGUCCGAUGCUAUUGGAACAAACUGGCGGGCAAUGAACCGGAAACACUA------AAAACAGAGCAGCCGGCAAAGGAAACCCAGCCAGGCAUUCACUUC
((((((((((..((((((...)))))).....((((((((.......((((...(.((.------.....)).)...)))).........))).))))))))))))))). ( -35.79)
>DroYak_CAF1 3147 104 - 1
AAGUGGAUGCAGUCCGUUGCUAUUGGAACAAACUGGCGGGCAAUGAACCGGAAACACUA------AAAACAGAGCAGCCGGCAAAGGAAACCCAGCCAGGCAUUCACUUC
((((((((((..((((.......)))).....((((((((.......((((...(.((.------.....)).)...)))).........))).))))))))))))))). ( -34.79)
>DroAna_CAF1 14975 104 - 1
AAGUGGAUGCUGUCCGAUGCUAUUGGAACAAGCUGGCAGGCAAUGAACCGGAAACUUUG------AAAGCCGAGAUGCCUGCCAAGGAGAAUCAGGGGGGUAUUCAUUUC
(((((((((((.(((((((((.........)))(((((((((.......(....)((((------.....)))).)))))))))......))).))).))))))))))). ( -37.20)
>consensus
AAGUGGAUGCAGUCCGAUGCUAUUGGAACAAACUGGCGGGCAAUGAACCGGAAACACUA______AAAACAGAGCAGCCGGCAAAGGAAACCCAGCCAGGCAUUCACUUC
((((((((((..(((((.....))))).....(((((((........))....................................((....)).))))))))))))))). (-20.74 = -21.72 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:43 2006