Locus 2329

Sequence ID 3L_DroMel_CAF1
Location 6,536,334 – 6,536,444
Length 110
Max. P 0.962404
window3597

overview

Window 7

Location 6,536,334 – 6,536,444
Length 110
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 92.42
Mean single sequence MFE -26.63
Consensus MFE -23.77
Energy contribution -23.21
Covariance contribution -0.56
Combinations/Pair 1.11
Mean z-score -1.62
Structure conservation index 0.89
SVM decision value 1.54
SVM RNA-class probability 0.962404
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6536334 110 + 23771897
ACGGACAAGCAUAAAAAACCGACGACGGGAGGUGAGUGGGUAUAUGGAAUGGAAAUGGAUGGAGAUAUUUACCUUGCAGAUAUU--UUGUAAAUAUUUUCGUUUAGUGCGAG
.((.((...((((....(((.((..(....)....)).))).)))).........(((((((((((((((((............--..))))))))))))))))))).)).. ( -25.44)
>DroSec_CAF1 27592 110 + 1
ACGGACAAGCAUAAAAAACCGACGACGGGAGGUGAGUGGGAAUUUGGAAUGGAAUUGGAUGGAGAUAUUUACCUUGCAGAUAUU--UUGUAAAUAUUUUCGUUUAGUGCGAG
........((((......((.((..(....)....)).))...............(((((((((((((((((............--..)))))))))))))))))))))... ( -23.64)
>DroSim_CAF1 28194 110 + 1
ACGGACAAGCAUAAAAAACCGACGACGGGAGGUGAGUGGGAAUUUGGAAUGGAAUUGGAUGGAGAUAUUUACCUUGCAGAUAUU--UUGUAAAUAUUUUCGUUUAGUUCGAG
.....((..(((......(((....)))...)))..)).............(((((((((((((((((((((............--..)))))))))))))))))))))... ( -26.74)
>DroEre_CAF1 27870 112 + 1
ACGGACAAGCACAAAAAACCGACGACGGGAGGUGAGUGGAAAUUGGGAAUGGAUGUGGAUGGAGAUAUUUACAGGGCAGAUAUUUUUUGUAAAUAUUUUCGUUCAGUGCGGG
........((((.....(((..(....)..)))......................(((((((((((((((((((((........)))))))))))))))))))))))))... ( -30.60)
>DroYak_CAF1 28441 110 + 1
ACGGACAAGCAUAAAAAACCGACGACGGGAGGUGAGUGGGAAUUUCGAUUGGAAGUGGAUGAAGAUAUUUACCUUGCAGAUAUU--UUGUAAAUAUUUUCGUUCAGUGCGGA
........((((......((.((..(....)....)).)).(((((.....)))))((((((((((((((((............--..)))))))))))))))).))))... ( -26.74)
>consensus
ACGGACAAGCAUAAAAAACCGACGACGGGAGGUGAGUGGGAAUUUGGAAUGGAAGUGGAUGGAGAUAUUUACCUUGCAGAUAUU__UUGUAAAUAUUUUCGUUUAGUGCGAG
.((.((...(((.....(((..(....)..)))..))).................(((((((((((((((((................))))))))))))))))))).)).. (-23.77 = -23.21 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:42 2006