| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,532,377 – 6,532,488 |
| Length | 111 |
| Max. P | 0.953755 |
| Location | 6,532,377 – 6,532,488 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 92.52 |
| Mean single sequence MFE | -27.12 |
| Consensus MFE | -24.60 |
| Energy contribution | -24.84 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.953755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6532377 111 + 23771897 AAUUCCCAAAGCUUGCGUUUAAACUGAAGUAAAACGCUUACAAAUGAGCAUAUAAAACUCACUUUUGGCCAACUCUUAAGGGAGAGGAUGGGUGAACUUCAGAUGAAAUGG ...............(((((...(((((((.....(((((....))))).........((((((....((..((((....)))).))..)))))))))))))...))))). ( -26.70) >DroSec_CAF1 23973 111 + 1 AAUUCCCAAAGCUUGCGUUUAAACUGAAGUAAAACGCUUACAAAUGAGCACAUAAAACUCACUUUUGGCCAACUCUUAAGGGAGAGGAUGGGUAAACUUCAGAUGGAACGG ...............(((((...(((((((.....(((((....)))))...............(((.(((.(((((....)))))..))).))))))))))...))))). ( -28.60) >DroSim_CAF1 24189 111 + 1 AAUUCCCAAAGCUUGCGUUUAAACUGAAGUAAAACGCUUACAAAUGAGCACAUAAAACUCACUUUUGGCCAACUCUUAGGGGAGAGGAUGGGUGAACUUCAGAUGUUACGG ...............(((.....(((((((.....(((((....))))).........((((((....((..((((....)))).))..))))))))))))).....))). ( -25.80) >DroEre_CAF1 23947 111 + 1 AAUUCCCUAAGCUUGCGUUUAAACUGAAGUAAAACGCUUACAAAUGAGCACAUAAGUCCAACUUUUGGCCAACUGUCAGGGGAGAGGCUGGUAGGACUUCAGAUAAAACGG ...............(((((...(((((((...(((((((....))))).....((((...((((((((.....))))))))...)))).))...)))))))...))))). ( -27.90) >DroYak_CAF1 24455 111 + 1 AAUUCCCUAAGCUUGCGUUUAAACUGAAGUAAAACGCUUACAAAUGAGCACAUAAAACUCACUUUUGGCCAACUCUUAAGGGAGAGGAUGGGAGAACUUCAGAUAAAACGG ...............(((((...(((((((.....(((((....)))))........(((.(....).(((.(((((....)))))..)))))).)))))))...))))). ( -26.60) >consensus AAUUCCCAAAGCUUGCGUUUAAACUGAAGUAAAACGCUUACAAAUGAGCACAUAAAACUCACUUUUGGCCAACUCUUAAGGGAGAGGAUGGGUGAACUUCAGAUGAAACGG ...............(((((...(((((((.....(((((....)))))...............(((.(((.(((((....)))))..))).))))))))))...))))). (-24.60 = -24.84 + 0.24)
| Location | 6,532,377 – 6,532,488 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 92.52 |
| Mean single sequence MFE | -25.76 |
| Consensus MFE | -21.58 |
| Energy contribution | -22.62 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.566016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6532377 111 - 23771897 CCAUUUCAUCUGAAGUUCACCCAUCCUCUCCCUUAAGAGUUGGCCAAAAGUGAGUUUUAUAUGCUCAUUUGUAAGCGUUUUACUUCAGUUUAAACGCAAGCUUUGGGAAUU ........((..(((((...(((..((((......)))).)))....((((((((.......))))))))....((((((.((....))..)))))).)))))..)).... ( -26.30) >DroSec_CAF1 23973 111 - 1 CCGUUCCAUCUGAAGUUUACCCAUCCUCUCCCUUAAGAGUUGGCCAAAAGUGAGUUUUAUGUGCUCAUUUGUAAGCGUUUUACUUCAGUUUAAACGCAAGCUUUGGGAAUU ..(((((....(((((((..(((..((((......)))).)))....((((((((.......))))))))....((((((.((....))..))))))))))))).))))). ( -28.50) >DroSim_CAF1 24189 111 - 1 CCGUAACAUCUGAAGUUCACCCAUCCUCUCCCCUAAGAGUUGGCCAAAAGUGAGUUUUAUGUGCUCAUUUGUAAGCGUUUUACUUCAGUUUAAACGCAAGCUUUGGGAAUU ........((..(((((...(((..((((......)))).)))....((((((((.......))))))))....((((((.((....))..)))))).)))))..)).... ( -26.30) >DroEre_CAF1 23947 111 - 1 CCGUUUUAUCUGAAGUCCUACCAGCCUCUCCCCUGACAGUUGGCCAAAAGUUGGACUUAUGUGCUCAUUUGUAAGCGUUUUACUUCAGUUUAAACGCAAGCUUAGGGAAUU .(((((...(((((((...(((((........)))((((.((((((.(((.....))).)).)).)).))))....))...)))))))...)))))............... ( -22.30) >DroYak_CAF1 24455 111 - 1 CCGUUUUAUCUGAAGUUCUCCCAUCCUCUCCCUUAAGAGUUGGCCAAAAGUGAGUUUUAUGUGCUCAUUUGUAAGCGUUUUACUUCAGUUUAAACGCAAGCUUAGGGAAUU ..................((((...((((......))))..(((...((((((((.......))))))))....((((((.((....))..))))))..)))..))))... ( -25.40) >consensus CCGUUUCAUCUGAAGUUCACCCAUCCUCUCCCUUAAGAGUUGGCCAAAAGUGAGUUUUAUGUGCUCAUUUGUAAGCGUUUUACUUCAGUUUAAACGCAAGCUUUGGGAAUU ........(((((((((...(((..((((......)))).)))....((((((((.......))))))))....((((((.((....))..)))))).))))))))).... (-21.58 = -22.62 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:39 2006