Locus 2324

Sequence ID 3L_DroMel_CAF1
Location 6,517,544 – 6,517,644
Length 100
Max. P 0.732631
window3586

overview

Window 6

Location 6,517,544 – 6,517,644
Length 100
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 73.99
Mean single sequence MFE -18.39
Consensus MFE -3.82
Energy contribution -3.35
Covariance contribution -0.47
Combinations/Pair 1.83
Mean z-score -2.71
Structure conservation index 0.21
SVM decision value 0.43
SVM RNA-class probability 0.732631
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6517544 100 - 23771897
A-AAAACACAGCGAAUGCCAUAAUUACAUUGAACACGGUUGCAUAAAUAUGCAACGU--GCUUAUGAAUAAAAUCAAUU-UCAAUAUUAUUAUUUUCG---CUG-AGU
.-......(((((((....(((((...((((((((((.((((((....)))))))))--)....(((......)))..)-)))))...))))).))))---)))-... ( -26.10)
>DroVir_CAF1 8761 98 - 1
A-AAACCUCAA------CAAUAAUUGCAUUGCACAUU-UCGGGCAAAUACUUGGCAA--ACAUAUAAAUGAAAUGAAUUUUCAAUAUUAUUAUAUAUCCACCUGCAGU
.-.........------.....((((((((((.(...-...))))).....(((...--....((((.(((((.....)))))...)))).......)))..)))))) ( -11.24)
>DroSec_CAF1 9005 100 - 1
A-AAAACACAGCGAAUGCCAUAAUUACAUUGAACACGGUUGCAUAAAUAUGCAACGU--CCUUAUGAAUAAAAUCAAUU-UCAAUAUUAUUAUUUUCG---CUG-AGU
.-......(((((((....(((((...((((((....(((((((....)))))))..--.....(((......)))..)-)))))...))))).))))---)))-... ( -24.00)
>DroSim_CAF1 9028 100 - 1
A-AAAACACAGCGAAUGCCAUAAUUACAUUGAACACGGUUGCAUAAAUAUGCAACGU--CCUUAUGAAUAAAAUCAAUU-UCAAUAUUAUUAUUUUCG---CUG-AGU
.-......(((((((....(((((...((((((....(((((((....)))))))..--.....(((......)))..)-)))))...))))).))))---)))-... ( -24.00)
>DroMoj_CAF1 9817 98 - 1
AAAAACCUCAA------CAAUAAUUGCAUUGCACAUU-UUGGGCAAAUACUCUGCAAAAACAUAUAAAUAAAAUCAAUUUGCAAUAUUAUU---UAUCCACCUGUAGU
...........------..........((((((....-.(((..(((((...((((((...................))))))....))))---)..)))..)))))) ( -10.91)
>DroAna_CAF1 10090 98 - 1
A-UAAGCAC--UCCCUGCAAUAAUUACAUCCAACAUGGCUGUAUAAAUAUUCAACAU--CCUUAUGAAUAAAAUCAAUU-UCAAUAUUAUUAUUUUCG---CUG-GGC
.-.......--.(((.((......((((.((.....)).))))....((((((....--.....)))))).........-.................)---).)-)). ( -14.10)
>consensus
A_AAAACACAGCGAAUGCAAUAAUUACAUUGAACACGGUUGCAUAAAUAUGCAACAU__CCUUAUGAAUAAAAUCAAUU_UCAAUAUUAUUAUUUUCG___CUG_AGU
.....................................((((((......))))))..................................................... ( -3.82 =  -3.35 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:32 2006