| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,515,563 – 6,515,665 |
| Length | 102 |
| Max. P | 0.574415 |
| Location | 6,515,563 – 6,515,665 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 81.79 |
| Mean single sequence MFE | -30.52 |
| Consensus MFE | -18.45 |
| Energy contribution | -18.53 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6515563 102 - 23771897 GUUAGAGGGCUUGCGCUCAUUUGUUUGCAUUUGUAUGGGGUGUUAAAUUAUCCUCGGGAUAAACGUAAAAGUGCAAAUGCCGGCGUGCGCGCUAGUACUUGU ....(((..((.((((.(((..((..((((((((((((((((......))))))((.......)).....))))))))))..))))).)))).))..))).. ( -34.10) >DroVir_CAF1 6780 95 - 1 GU--UGCAGCUCGCGCUCAUUUGUUUGCAUUUGUACGAGGCGUUAAAUUAUCCUCAGGAUGCACGUAAAACUGCAAAUGCCGUCAUGAGC-----UACUUGU ..--.((.....))(((((..((...(((((((((....((((.....(((((...))))).)))).....)))))))))...)))))))-----....... ( -24.10) >DroEre_CAF1 7022 102 - 1 GUUAGAGGGCUUGCGCUUAUUUGUUUGCAUUUGUAUGGGGUGUUAAAUUAUCCUCGGGAUAAACGUAAAAGUGCAAAUGCCGGCGUACGCCCGAGAGCUUGU (((...((((.(((((((((((((((((.(((((.(((((((......))))).))..))))).))))....)))))))..)))))).))))...))).... ( -33.60) >DroYak_CAF1 7304 102 - 1 GUUUGGGGGCUUGCGCUCAUUUGUUUGCAUUUGUAUGGGGUGUUAAAUUAUCCUCGGGAUAAACGUAAAAGUGCAAAUGCCGGCGUACGCGCGAGAACUUGU ....(((..(((((((.....(((..((((((((((((((((......))))))((.......)).....))))))))))..)))...)))))))..))).. ( -34.90) >DroMoj_CAF1 6920 93 - 1 ----UGCAGCUUACGCUCAUUUGUUUGCAUUUGUACGAGGCGUUAAAUUAUCCUCAGGAUGCACGUAAAACUGCAAAUGCCGUCAUGAGC-----UGCUUGU ----.((((((((((..((..((....))..))..)).((((((.....((((...))))(((........))).))))))....)))))-----))).... ( -27.80) >DroAna_CAF1 7918 100 - 1 GUUAGAGGACACACGCUCAUUUGUUUGCAUUUGUAUGGGGUGUUAAAUUAUCCUCAGGAUAAACGUUAAAGUGCAAAUGGCGGUGUGCGAGGGA--GCUUCU ......(.((((.(((.(((((((..((.(((((.(((((((......))))).))..))))).))......)))))))))))))).)((((..--.)))). ( -28.60) >consensus GUUAGAGGGCUUGCGCUCAUUUGUUUGCAUUUGUAUGGGGUGUUAAAUUAUCCUCAGGAUAAACGUAAAAGUGCAAAUGCCGGCGUGCGCGCGA_UACUUGU ........((.((((((....(((((((((((.(((((((...........)))).(......)))).)))))))))))..)))))).))............ (-18.45 = -18.53 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:31 2006