Locus 2322

Sequence ID 3L_DroMel_CAF1
Location 6,514,040 – 6,514,141
Length 101
Max. P 0.905332
window3584

overview

Window 4

Location 6,514,040 – 6,514,141
Length 101
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 80.53
Mean single sequence MFE -30.55
Consensus MFE -16.60
Energy contribution -15.99
Covariance contribution -0.61
Combinations/Pair 1.22
Mean z-score -2.80
Structure conservation index 0.54
SVM decision value 1.04
SVM RNA-class probability 0.905332
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6514040 101 + 23771897
ACC----UCCUC-UUGGGCAUUUUUAUUUAUGAUAUAUAGAUUACUCAGCGAGUUGCUAAAGCAACGGGCAAAGUGCUU-UUGC------UUGGGGCAAA-UG--CUUCCCAUUUC
...----.....-.((((.......(((((((...))))))).....((((..(((((.((((((.((((.....))))-))))------))..))))).-))--)).)))).... ( -23.60)
>DroSec_CAF1 5550 107 + 1
ACC----UCCUC-UUGGGUAUUUUUAUUUAUGAUAUAUAGAUUACUCAGCGAGUUGCUAAAGCAACGGGCAAAGUGCUU-UUGCUUUUGCCCGGGGUAAA-UG--CUUCCCAUUUC
...----...((-(((((((..(((((.........))))).))))))).))(((((....)))))((((((((.((..-..))))))))))((((....-..--..))))..... ( -33.70)
>DroSim_CAF1 5570 108 + 1
ACC----UCCUC-UUGGGUAUUUUUAUUUAUGAUAUAUAGAUUACUCAGCGAGUUGCUAAAGCAACGGGCAAAGUGCUUUUUGCUUUUGCCCGGGGUAAA-UG--CUUCCCAUUUC
...----...((-(((((((..(((((.........))))).))))))).))(((((....)))))((((((((.((.....))))))))))((((....-..--..))))..... ( -33.70)
>DroEre_CAF1 5543 86 + 1
ACC----UCCUC-UUGGGCAUUUUUAUUUAUGAUAUAUAGAUUACUCAGCGAGUUGCUAAAGCAACGGGCAAAGUGCUU-UUG------CCGGGGGUA------------------
(((----(((.(-..(((((((((.(((((((...)))))))......((..(((((....)))))..)))))))))))-..)------..)))))).------------------ ( -27.30)
>DroYak_CAF1 5836 105 + 1
ACC----UCCUC-UUGGGCAUUUUUAUUUAUGAUAUAUAGAUUACUCAGCGAGUUGCUAAAGCAACGGGCAAAGUGCUUUUUG------CCCCGGGUAAAAUGUAUAUCCCAUUUG
...----.....-.(((((((........)))(((((((..((((((.....(((((....)))))((((((((....)))))------))).))))))..))))))))))).... ( -33.40)
>DroAna_CAF1 6115 106 + 1
AGCAAAGUCCUCGUCGAGUGUUUUUAUUUAUGAUAUAUAGAUUACUCAGCGAGUUGCUUAGGCGACCGGUAAAGUGCUUUCUG------CUAAAGGAA-A-GC--AUUUCCACUUG
.((.((((.(((((.(((((..(((((.........))))).))))).)))))..))))..))....((..(((((((((((.------.....))))-)-))--))))))..... ( -31.60)
>consensus
ACC____UCCUC_UUGGGCAUUUUUAUUUAUGAUAUAUAGAUUACUCAGCGAGUUGCUAAAGCAACGGGCAAAGUGCUU_UUG______CCCGGGGUAAA_UG__CUUCCCAUUUC
........((((...(((((((((.(((((((...)))))))......((..(((((....)))))..))))))))))).............)))).................... (-16.60 = -15.99 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:30 2006