Locus 2320

Sequence ID 3L_DroMel_CAF1
Location 6,512,212 – 6,512,304
Length 92
Max. P 0.500000
window3581

overview

Window 1

Location 6,512,212 – 6,512,304
Length 92
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.11
Mean single sequence MFE -31.00
Consensus MFE -13.74
Energy contribution -14.27
Covariance contribution 0.53
Combinations/Pair 1.15
Mean z-score -2.21
Structure conservation index 0.44
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6512212 92 - 23771897
GUUUUAAAAAG--UUGGGGCUCCCAGUGGCGCAAUCAGCGCCC---CGGAAU--AAGCGA-AAGGAUGAGCGCAGUUUUUGGGGCUGGGCCACCACAAGA
..........(--(.(((((..(((((.((((.....))))((---(((((.--..(((.-.........)))...))))))))))))))).)))).... ( -31.90)
>DroVir_CAF1 3457 91 - 1
GUUUUAAAAGU--UAGGCGCUCCCAGUGGCGCAAUCAGCGCCAA-ACGAAAC--CAGCCAAAAGGAUGAACGCAGGUUCUUUGGCAGCGCCGC----AAA
...........--..((((((.....((((((.....)))))).-.......--..((((((.((((........))))))))))))))))..----... ( -32.50)
>DroGri_CAF1 3645 91 - 1
GUUUUAAAAGUUUUAGGGGCUCCCAGUGGCGCAAUCAGCGCCAAAACGGAACCCCAACCA-AAGCAUGAGCGAAGGU----UGCCAGCGCCAC----AAA
.........(((((.((((.(((...((((((.....))))))....))).))))....)-)))).((.(((..((.----..))..))))).----... ( -30.40)
>DroEre_CAF1 3807 91 - 1
GUUUUAAAAAG--UUGAAGCUCCCAGUGGCGCAAUCAGCGCCC---CGGAAU--AAGCGA-AAGGAUGAGCGCAGUUUU-GGGGCUGGGCCACCACAAAA
(((((((....--))))))).....(((((((.....))((((---((((((--..(((.-.........))).)))))-)))))...)))))....... ( -31.20)
>DroYak_CAF1 3938 92 - 1
GUUUUAAAAAG--UUGGGGCUCCCAGUGGCGCAAUCAGCGCCC---CGGAAU--AAGCGA-AAGGAUGAGCGCAGUUUUCGAGGCUGGGCCACCACAAAA
..........(--(.(((((..((((((((((.....))))).---(((((.--..(((.-.........)))...)))))..)))))))).)))).... ( -30.40)
>DroAna_CAF1 4308 89 - 1
GUUUUAAAAAG--UUCAGGCUCCCAGUGGCGCAAUCAGCGCC----CAGAAU--AACCGA-AAGGAUGAGCGUCGUUUUC-GGGCUGAGCCACCACA-AA
...........--....(((((..((((((((.....)))))----......--..((((-((((((....))).)))))-))))))))))......-.. ( -29.60)
>consensus
GUUUUAAAAAG__UUGGGGCUCCCAGUGGCGCAAUCAGCGCCC___CGGAAU__AAGCGA_AAGGAUGAGCGCAGUUUU_GGGGCUGGGCCACCACAAAA
.................(((((.....(((((.....)))))................................(((.....))).)))))......... (-13.74 = -14.27 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:27 2006